Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Tango6-202ENSMUST00000211979 2722 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Trim28Q62318 AC164565.1-201ENSMUST00000217520 1484 ntBASIC19.67■□□□□ 0.74
Trim28Q62318 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC19.67■□□□□ 0.74
Trim28Q62318 Gm43195-201ENSMUST00000200614 2332 ntBASIC19.67■□□□□ 0.74
Trim28Q62318 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim28Q62318 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim28Q62318 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim28Q62318 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim28Q62318 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Trim28Q62318 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim28Q62318 Gm15199-201ENSMUST00000129933 542 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Trim28Q62318 Abhd11os-201ENSMUST00000136022 604 ntTSL 2 BASIC19.66■□□□□ 0.74
Trim28Q62318 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
Trim28Q62318 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim28Q62318 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim28Q62318 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim28Q62318 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim28Q62318 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim28Q62318 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Trim28Q62318 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Trim28Q62318 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim28Q62318 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim28Q62318 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim28Q62318 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim28Q62318 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Trim28Q62318 Asic1-205ENSMUST00000228185 1818 ntBASIC19.65■□□□□ 0.74
Trim28Q62318 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim28Q62318 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
Trim28Q62318 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim28Q62318 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim28Q62318 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim28Q62318 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim28Q62318 Car10-205ENSMUST00000107861 2613 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Trim28Q62318 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim28Q62318 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Trim28Q62318 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC19.65■□□□□ 0.74
Trim28Q62318 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Trim28Q62318 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim28Q62318 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim28Q62318 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Trim28Q62318 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
Trim28Q62318 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Trim28Q62318 Gm37277-201ENSMUST00000194052 1111 ntBASIC19.64■□□□□ 0.73
Trim28Q62318 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC19.64■□□□□ 0.73
Trim28Q62318 Gm5771-201ENSMUST00000049079 798 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim28Q62318 Rtl8c-201ENSMUST00000063384 401 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Trim28Q62318 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Trim28Q62318 Hsd17b14-201ENSMUST00000107752 1400 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
Trim28Q62318 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim28Q62318 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim28Q62318 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim28Q62318 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Trim28Q62318 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim28Q62318 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim28Q62318 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim28Q62318 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Trim28Q62318 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Trim28Q62318 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Trim28Q62318 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Trim28Q62318 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim28Q62318 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim28Q62318 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim28Q62318 Gm13464-201ENSMUST00000119418 935 ntBASIC19.63■□□□□ 0.73
Trim28Q62318 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC19.63■□□□□ 0.73
Trim28Q62318 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC19.63■□□□□ 0.73
Trim28Q62318 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim28Q62318 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim28Q62318 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim28Q62318 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
Trim28Q62318 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim28Q62318 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Trim28Q62318 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim28Q62318 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
Trim28Q62318 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Trim28Q62318 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Trim28Q62318 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim28Q62318 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Trim28Q62318 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim28Q62318 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC19.62■□□□□ 0.73
Trim28Q62318 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Trim28Q62318 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim28Q62318 Gm9954-202ENSMUST00000198686 4725 ntBASIC19.62■□□□□ 0.73
Trim28Q62318 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC19.62■□□□□ 0.73
Trim28Q62318 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC19.62■□□□□ 0.73
Trim28Q62318 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim28Q62318 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim28Q62318 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Trim28Q62318 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Trim28Q62318 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Trim28Q62318 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC19.62■□□□□ 0.73
Trim28Q62318 Gm8749-201ENSMUST00000117737 331 ntBASIC19.62■□□□□ 0.73
Trim28Q62318 Cd209f-202ENSMUST00000138439 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim28Q62318 Cd209f-203ENSMUST00000145007 1186 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim28Q62318 Gm5479-201ENSMUST00000160578 435 ntBASIC19.62■□□□□ 0.73
Trim28Q62318 Gm9824-201ENSMUST00000178707 561 ntBASIC19.62■□□□□ 0.73
Trim28Q62318 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim28Q62318 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Trim28Q62318 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim28Q62318 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim28Q62318 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 38.6 ms