Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
ShhQ62226 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
ShhQ62226 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
ShhQ62226 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
ShhQ62226 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
ShhQ62226 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
ShhQ62226 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
ShhQ62226 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
ShhQ62226 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
ShhQ62226 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
ShhQ62226 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
ShhQ62226 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC14.18□□□□□ -0.14
ShhQ62226 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
ShhQ62226 Adamts14-201ENSMUST00000092486 5188 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
ShhQ62226 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
ShhQ62226 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC14.18□□□□□ -0.14
ShhQ62226 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
ShhQ62226 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC14.18□□□□□ -0.14
ShhQ62226 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
ShhQ62226 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC14.18□□□□□ -0.14
ShhQ62226 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
ShhQ62226 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
ShhQ62226 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
ShhQ62226 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC14.18□□□□□ -0.14
ShhQ62226 Ubn1-201ENSMUST00000052449 6455 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
ShhQ62226 Usp53-201ENSMUST00000090379 6185 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
ShhQ62226 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC14.18□□□□□ -0.14
ShhQ62226 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
ShhQ62226 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
ShhQ62226 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
ShhQ62226 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
ShhQ62226 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
ShhQ62226 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
ShhQ62226 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
ShhQ62226 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
ShhQ62226 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
ShhQ62226 Chmp4c-201ENSMUST00000029049 6188 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ShhQ62226 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ShhQ62226 Gm11873-201ENSMUST00000117877 1304 ntBASIC14.17□□□□□ -0.14
ShhQ62226 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
ShhQ62226 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ShhQ62226 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ShhQ62226 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ShhQ62226 Camsap1-202ENSMUST00000114167 7981 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
ShhQ62226 Foxo1-201ENSMUST00000053764 8665 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ShhQ62226 Zfp316-202ENSMUST00000161448 6891 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ShhQ62226 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ShhQ62226 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
ShhQ62226 Mafg-203ENSMUST00000106181 840 ntAPPRIS P1 TSL 3 BASIC14.17□□□□□ -0.14
ShhQ62226 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
ShhQ62226 Gm9172-201ENSMUST00000212092 954 ntBASIC14.17□□□□□ -0.14
ShhQ62226 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC14.17□□□□□ -0.14
ShhQ62226 Cox7a2l-201ENSMUST00000025095 1078 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ShhQ62226 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ShhQ62226 Kmt5b-208ENSMUST00000113977 6002 ntAPPRIS P3 TSL 5 BASIC14.17□□□□□ -0.14
ShhQ62226 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
ShhQ62226 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
ShhQ62226 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC14.17□□□□□ -0.14
ShhQ62226 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
ShhQ62226 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ShhQ62226 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
ShhQ62226 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
ShhQ62226 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ShhQ62226 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
ShhQ62226 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ShhQ62226 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
ShhQ62226 CT010478.1-201ENSMUST00000220747 2787 ntBASIC14.17□□□□□ -0.14
ShhQ62226 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ShhQ62226 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ShhQ62226 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC14.16□□□□□ -0.14
ShhQ62226 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ShhQ62226 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
ShhQ62226 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
ShhQ62226 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ShhQ62226 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ShhQ62226 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ShhQ62226 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ShhQ62226 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC14.16□□□□□ -0.14
ShhQ62226 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ShhQ62226 Gm4609-201ENSMUST00000106443 1002 ntBASIC14.16□□□□□ -0.14
ShhQ62226 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC14.16□□□□□ -0.14
ShhQ62226 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC14.16□□□□□ -0.14
ShhQ62226 Gm5138-201ENSMUST00000113842 1002 ntBASIC14.16□□□□□ -0.14
ShhQ62226 Gm15191-201ENSMUST00000117933 1000 ntBASIC14.16□□□□□ -0.14
ShhQ62226 Gm12182-201ENSMUST00000118655 1008 ntBASIC14.16□□□□□ -0.14
ShhQ62226 Gm13882-201ENSMUST00000120886 1002 ntBASIC14.16□□□□□ -0.14
ShhQ62226 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
ShhQ62226 Arhgap27os1-201ENSMUST00000130556 923 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
ShhQ62226 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC14.16□□□□□ -0.14
ShhQ62226 Gm10284-201ENSMUST00000145057 1005 ntBASIC14.16□□□□□ -0.14
ShhQ62226 Gm10481-201ENSMUST00000179228 1002 ntBASIC14.16□□□□□ -0.14
ShhQ62226 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC14.16□□□□□ -0.14
ShhQ62226 Gm2574-201ENSMUST00000181051 1002 ntBASIC14.16□□□□□ -0.14
ShhQ62226 Gm3200-201ENSMUST00000181493 1002 ntBASIC14.16□□□□□ -0.14
ShhQ62226 Gm8825-201ENSMUST00000182565 998 ntBASIC14.16□□□□□ -0.14
ShhQ62226 Gm4518-201ENSMUST00000182638 718 ntBASIC14.16□□□□□ -0.14
ShhQ62226 Gm8330-201ENSMUST00000182754 1008 ntBASIC14.16□□□□□ -0.14
ShhQ62226 Gm4575-201ENSMUST00000182991 1002 ntBASIC14.16□□□□□ -0.14
ShhQ62226 Gm8709-201ENSMUST00000183230 1012 ntBASIC14.16□□□□□ -0.14
ShhQ62226 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 45.9 ms