Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Gm2651-201ENSMUST00000203560 838 ntBASIC18.67■□□□□ 0.58
Trim27Q62158 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim27Q62158 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim27Q62158 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim27Q62158 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim27Q62158 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim27Q62158 Gm29361-201ENSMUST00000183323 2000 ntBASIC18.67■□□□□ 0.58
Trim27Q62158 Gm13294-201ENSMUST00000121757 1330 ntBASIC18.67■□□□□ 0.58
Trim27Q62158 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Trim27Q62158 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim27Q62158 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim27Q62158 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim27Q62158 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trim27Q62158 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC18.67■□□□□ 0.58
Trim27Q62158 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Trim27Q62158 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim27Q62158 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim27Q62158 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Trim27Q62158 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim27Q62158 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim27Q62158 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim27Q62158 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC18.66■□□□□ 0.58
Trim27Q62158 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC18.66■□□□□ 0.58
Trim27Q62158 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Trim27Q62158 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim27Q62158 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim27Q62158 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Trim27Q62158 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
Trim27Q62158 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim27Q62158 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Trim27Q62158 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Trim27Q62158 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Trim27Q62158 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Trim27Q62158 Gm27300-201ENSMUST00000184085 97 ntBASIC18.66■□□□□ 0.58
Trim27Q62158 Gm27335-201ENSMUST00000184758 97 ntBASIC18.66■□□□□ 0.58
Trim27Q62158 Gm43767-201ENSMUST00000198933 381 ntBASIC18.66■□□□□ 0.58
Trim27Q62158 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC18.66■□□□□ 0.58
Trim27Q62158 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim27Q62158 Gm5366-201ENSMUST00000215494 1338 ntBASIC18.66■□□□□ 0.58
Trim27Q62158 Camk2g-217ENSMUST00000226630 1937 ntBASIC18.66■□□□□ 0.58
Trim27Q62158 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim27Q62158 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trim27Q62158 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim27Q62158 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim27Q62158 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim27Q62158 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim27Q62158 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim27Q62158 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim27Q62158 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim27Q62158 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Trim27Q62158 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC18.65■□□□□ 0.58
Trim27Q62158 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Trim27Q62158 Mzt1-203ENSMUST00000227948 952 ntBASIC18.65■□□□□ 0.58
Trim27Q62158 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim27Q62158 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim27Q62158 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim27Q62158 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC18.65■□□□□ 0.58
Trim27Q62158 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
Trim27Q62158 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim27Q62158 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim27Q62158 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Trim27Q62158 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim27Q62158 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim27Q62158 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim27Q62158 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Trim27Q62158 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim27Q62158 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Trim27Q62158 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Trim27Q62158 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
Trim27Q62158 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
Trim27Q62158 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim27Q62158 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC18.64■□□□□ 0.57
Trim27Q62158 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim27Q62158 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim27Q62158 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
Trim27Q62158 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
Trim27Q62158 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim27Q62158 Gm13597-201ENSMUST00000121239 375 ntBASIC18.64■□□□□ 0.57
Trim27Q62158 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Trim27Q62158 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC18.64■□□□□ 0.57
Trim27Q62158 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
Trim27Q62158 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Trim27Q62158 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim27Q62158 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC18.64■□□□□ 0.57
Trim27Q62158 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim27Q62158 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim27Q62158 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Trim27Q62158 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim27Q62158 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim27Q62158 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC18.64■□□□□ 0.57
Trim27Q62158 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trim27Q62158 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim27Q62158 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC18.63■□□□□ 0.57
Trim27Q62158 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim27Q62158 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC18.63■□□□□ 0.57
Trim27Q62158 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim27Q62158 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Trim27Q62158 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim27Q62158 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Trim27Q62158 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 22.8 ms