Protein–RNA interactions for Protein: Q5SNZ0

Ccdc88a, Girdin, mousemouse

Predictions only

Length 1,873 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88aQ5SNZ0 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ccdc88aQ5SNZ0 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ccdc88aQ5SNZ0 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ccdc88aQ5SNZ0 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Ccdc88aQ5SNZ0 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ccdc88aQ5SNZ0 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC17.35■□□□□ 0.37
Ccdc88aQ5SNZ0 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ccdc88aQ5SNZ0 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Ccdc88aQ5SNZ0 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC17.35■□□□□ 0.37
Ccdc88aQ5SNZ0 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ccdc88aQ5SNZ0 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ccdc88aQ5SNZ0 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Ccdc88aQ5SNZ0 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Ccdc88aQ5SNZ0 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ccdc88aQ5SNZ0 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ccdc88aQ5SNZ0 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ccdc88aQ5SNZ0 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Ccdc88aQ5SNZ0 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Ccdc88aQ5SNZ0 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC17.35■□□□□ 0.37
Ccdc88aQ5SNZ0 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC17.35■□□□□ 0.37
Ccdc88aQ5SNZ0 Gm15199-201ENSMUST00000129933 542 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Ccdc88aQ5SNZ0 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Ccdc88aQ5SNZ0 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC17.35■□□□□ 0.37
Ccdc88aQ5SNZ0 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC17.35■□□□□ 0.37
Ccdc88aQ5SNZ0 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ccdc88aQ5SNZ0 Gm5771-201ENSMUST00000049079 798 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ccdc88aQ5SNZ0 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC17.35■□□□□ 0.37
Ccdc88aQ5SNZ0 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC17.35■□□□□ 0.37
Ccdc88aQ5SNZ0 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC17.35■□□□□ 0.37
Ccdc88aQ5SNZ0 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ccdc88aQ5SNZ0 BC037039-201ENSMUST00000192003 2205 ntBASIC17.34■□□□□ 0.37
Ccdc88aQ5SNZ0 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC17.34■□□□□ 0.37
Ccdc88aQ5SNZ0 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ccdc88aQ5SNZ0 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ccdc88aQ5SNZ0 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Ccdc88aQ5SNZ0 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Ccdc88aQ5SNZ0 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Ccdc88aQ5SNZ0 Orai3-202ENSMUST00000118865 768 ntTSL 3 BASIC17.34■□□□□ 0.37
Ccdc88aQ5SNZ0 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ccdc88aQ5SNZ0 Gm24158-201ENSMUST00000175263 71 ntBASIC17.34■□□□□ 0.37
Ccdc88aQ5SNZ0 Gltpd2-202ENSMUST00000179000 794 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
Ccdc88aQ5SNZ0 Gm27306-201ENSMUST00000183970 107 ntBASIC17.34■□□□□ 0.37
Ccdc88aQ5SNZ0 Gm7556-201ENSMUST00000201178 1084 ntBASIC17.34■□□□□ 0.37
Ccdc88aQ5SNZ0 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Ccdc88aQ5SNZ0 Gm44855-201ENSMUST00000205725 362 ntBASIC17.34■□□□□ 0.37
Ccdc88aQ5SNZ0 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC17.34■□□□□ 0.37
Ccdc88aQ5SNZ0 Bet1l-209ENSMUST00000211624 769 ntTSL 3 BASIC17.34■□□□□ 0.37
Ccdc88aQ5SNZ0 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Ccdc88aQ5SNZ0 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Ccdc88aQ5SNZ0 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC17.34■□□□□ 0.37
Ccdc88aQ5SNZ0 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Ccdc88aQ5SNZ0 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Ccdc88aQ5SNZ0 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ccdc88aQ5SNZ0 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ccdc88aQ5SNZ0 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ccdc88aQ5SNZ0 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Ccdc88aQ5SNZ0 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Ccdc88aQ5SNZ0 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Ccdc88aQ5SNZ0 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
Ccdc88aQ5SNZ0 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Ccdc88aQ5SNZ0 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Ccdc88aQ5SNZ0 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Ccdc88aQ5SNZ0 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Ccdc88aQ5SNZ0 Gm14719-201ENSMUST00000121891 340 ntBASIC17.33■□□□□ 0.37
Ccdc88aQ5SNZ0 Cyba-201ENSMUST00000017604 744 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Ccdc88aQ5SNZ0 Gm29541-201ENSMUST00000191351 678 ntBASIC17.33■□□□□ 0.37
Ccdc88aQ5SNZ0 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Ccdc88aQ5SNZ0 Cript-201ENSMUST00000024959 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Ccdc88aQ5SNZ0 Armc12-201ENSMUST00000025060 1083 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Ccdc88aQ5SNZ0 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Ccdc88aQ5SNZ0 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Ccdc88aQ5SNZ0 Lrwd1-201ENSMUST00000006301 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ccdc88aQ5SNZ0 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ccdc88aQ5SNZ0 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ccdc88aQ5SNZ0 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ccdc88aQ5SNZ0 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Ccdc88aQ5SNZ0 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
Ccdc88aQ5SNZ0 1700055C04Rik-201ENSMUST00000176450 355 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Ccdc88aQ5SNZ0 Mir8102-201ENSMUST00000184148 139 ntBASIC17.33■□□□□ 0.36
Ccdc88aQ5SNZ0 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Ccdc88aQ5SNZ0 AC164567.1-201ENSMUST00000219185 960 ntBASIC17.33■□□□□ 0.36
Ccdc88aQ5SNZ0 CT030684.1-201ENSMUST00000227292 914 ntBASIC17.33■□□□□ 0.36
Ccdc88aQ5SNZ0 Prg3-201ENSMUST00000028466 949 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ccdc88aQ5SNZ0 Commd9-201ENSMUST00000028584 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ccdc88aQ5SNZ0 Gm25857-201ENSMUST00000082788 129 ntBASIC17.33■□□□□ 0.36
Ccdc88aQ5SNZ0 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ccdc88aQ5SNZ0 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Ccdc88aQ5SNZ0 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC17.33■□□□□ 0.36
Ccdc88aQ5SNZ0 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Ccdc88aQ5SNZ0 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ccdc88aQ5SNZ0 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ccdc88aQ5SNZ0 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Ccdc88aQ5SNZ0 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ccdc88aQ5SNZ0 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ccdc88aQ5SNZ0 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC17.32■□□□□ 0.36
Ccdc88aQ5SNZ0 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ccdc88aQ5SNZ0 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ccdc88aQ5SNZ0 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC17.32■□□□□ 0.36
Ccdc88aQ5SNZ0 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Ccdc88aQ5SNZ0 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 34.1 ms