Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usp28Q5I043 Hacd4-201ENSMUST00000030221 2089 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usp28Q5I043 Gm43509-201ENSMUST00000196551 2594 ntBASIC17.29■□□□□ 0.36
Usp28Q5I043 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Usp28Q5I043 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC17.29■□□□□ 0.36
Usp28Q5I043 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Usp28Q5I043 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usp28Q5I043 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC17.29■□□□□ 0.36
Usp28Q5I043 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usp28Q5I043 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC17.29■□□□□ 0.36
Usp28Q5I043 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC17.29■□□□□ 0.36
Usp28Q5I043 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Usp28Q5I043 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usp28Q5I043 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usp28Q5I043 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC17.29■□□□□ 0.36
Usp28Q5I043 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC17.29■□□□□ 0.36
Usp28Q5I043 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Usp28Q5I043 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usp28Q5I043 Gm5934-201ENSMUST00000120734 2588 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Usp28Q5I043 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
Usp28Q5I043 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usp28Q5I043 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Usp28Q5I043 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usp28Q5I043 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Usp28Q5I043 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Usp28Q5I043 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC17.28■□□□□ 0.36
Usp28Q5I043 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usp28Q5I043 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Usp28Q5I043 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Usp28Q5I043 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC17.28■□□□□ 0.36
Usp28Q5I043 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
Usp28Q5I043 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
Usp28Q5I043 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC17.28■□□□□ 0.36
Usp28Q5I043 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC17.28■□□□□ 0.36
Usp28Q5I043 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usp28Q5I043 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Usp28Q5I043 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC17.28■□□□□ 0.36
Usp28Q5I043 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usp28Q5I043 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Usp28Q5I043 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Usp28Q5I043 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usp28Q5I043 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usp28Q5I043 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usp28Q5I043 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usp28Q5I043 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Usp28Q5I043 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usp28Q5I043 Tvp23b-201ENSMUST00000014321 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usp28Q5I043 Gm7901-201ENSMUST00000120430 1597 ntBASIC17.28■□□□□ 0.36
Usp28Q5I043 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
Usp28Q5I043 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Usp28Q5I043 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Usp28Q5I043 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Usp28Q5I043 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Usp28Q5I043 Nsg2-201ENSMUST00000020537 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Usp28Q5I043 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Usp28Q5I043 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Usp28Q5I043 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC17.27■□□□□ 0.36
Usp28Q5I043 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Usp28Q5I043 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC17.27■□□□□ 0.36
Usp28Q5I043 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Usp28Q5I043 Gm10499-201ENSMUST00000174094 934 ntBASIC17.27■□□□□ 0.36
Usp28Q5I043 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC17.27■□□□□ 0.36
Usp28Q5I043 Gm44357-201ENSMUST00000195897 142 ntBASIC17.27■□□□□ 0.36
Usp28Q5I043 Gm19658-201ENSMUST00000196231 138 ntBASIC17.27■□□□□ 0.36
Usp28Q5I043 Gm44367-201ENSMUST00000196836 138 ntBASIC17.27■□□□□ 0.36
Usp28Q5I043 Gm44350-201ENSMUST00000197197 138 ntBASIC17.27■□□□□ 0.36
Usp28Q5I043 Gm44390-201ENSMUST00000197533 144 ntBASIC17.27■□□□□ 0.36
Usp28Q5I043 Gm44313-201ENSMUST00000198018 138 ntBASIC17.27■□□□□ 0.36
Usp28Q5I043 Gm44486-201ENSMUST00000198508 138 ntBASIC17.27■□□□□ 0.36
Usp28Q5I043 Gm44314-201ENSMUST00000199263 138 ntBASIC17.27■□□□□ 0.36
Usp28Q5I043 Gm44394-201ENSMUST00000199558 138 ntBASIC17.27■□□□□ 0.36
Usp28Q5I043 Gm44484-201ENSMUST00000199873 138 ntBASIC17.27■□□□□ 0.36
Usp28Q5I043 Gm44466-201ENSMUST00000200264 138 ntBASIC17.27■□□□□ 0.36
Usp28Q5I043 Gm44359-201ENSMUST00000200671 138 ntBASIC17.27■□□□□ 0.36
Usp28Q5I043 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Usp28Q5I043 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC17.27■□□□□ 0.36
Usp28Q5I043 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Usp28Q5I043 Galnt14-201ENSMUST00000024858 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Usp28Q5I043 Rexo4-201ENSMUST00000064244 2281 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Usp28Q5I043 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
Usp28Q5I043 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Usp28Q5I043 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Usp28Q5I043 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Usp28Q5I043 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Usp28Q5I043 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Usp28Q5I043 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Usp28Q5I043 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC17.26■□□□□ 0.35
Usp28Q5I043 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
Usp28Q5I043 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Usp28Q5I043 Carlr-201ENSMUST00000181515 2574 ntBASIC17.26■□□□□ 0.35
Usp28Q5I043 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Usp28Q5I043 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Usp28Q5I043 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
Usp28Q5I043 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC17.26■□□□□ 0.35
Usp28Q5I043 Gm18669-201ENSMUST00000216049 778 ntBASIC17.26■□□□□ 0.35
Usp28Q5I043 Rbfox2-207ENSMUST00000227533 1041 ntBASIC17.26■□□□□ 0.35
Usp28Q5I043 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC17.26■□□□□ 0.35
Usp28Q5I043 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Usp28Q5I043 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Usp28Q5I043 Dcaf13-201ENSMUST00000022909 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 36.6 ms