Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm42722-201ENSMUST00000198855 940 ntTSL 3 BASIC19.2■□□□□ 0.66
Ddb1Q3U1J4 Gm42196-201ENSMUST00000209618 730 ntTSL 5 BASIC19.2■□□□□ 0.66
Ddb1Q3U1J4 AC153962.4-201ENSMUST00000217878 242 ntBASIC19.2■□□□□ 0.66
Ddb1Q3U1J4 Ifitm3-201ENSMUST00000026565 678 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ddb1Q3U1J4 Elf3-201ENSMUST00000003135 2095 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ddb1Q3U1J4 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ddb1Q3U1J4 Gm29154-231ENSMUST00000215120 1367 ntTSL 5 BASIC19.19■□□□□ 0.66
Ddb1Q3U1J4 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ddb1Q3U1J4 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ddb1Q3U1J4 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ddb1Q3U1J4 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ddb1Q3U1J4 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Ddb1Q3U1J4 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ddb1Q3U1J4 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
Ddb1Q3U1J4 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ddb1Q3U1J4 Gm45606-201ENSMUST00000209836 2795 ntBASIC19.19■□□□□ 0.66
Ddb1Q3U1J4 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ddb1Q3U1J4 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ddb1Q3U1J4 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Ddb1Q3U1J4 Gm15701-201ENSMUST00000129559 573 ntTSL 3 BASIC19.19■□□□□ 0.66
Ddb1Q3U1J4 Atpif1-203ENSMUST00000152993 462 ntTSL 2 BASIC19.19■□□□□ 0.66
Ddb1Q3U1J4 Gm43568-203ENSMUST00000199116 1270 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Ddb1Q3U1J4 Prtn3-201ENSMUST00000006679 1025 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ddb1Q3U1J4 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Ddb1Q3U1J4 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ddb1Q3U1J4 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ddb1Q3U1J4 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ddb1Q3U1J4 Dhrs4-201ENSMUST00000022821 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ddb1Q3U1J4 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC19.18■□□□□ 0.66
Ddb1Q3U1J4 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ddb1Q3U1J4 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ddb1Q3U1J4 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ddb1Q3U1J4 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ddb1Q3U1J4 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC19.18■□□□□ 0.66
Ddb1Q3U1J4 Pisd-ps1-201ENSMUST00000119128 1115 ntBASIC19.18■□□□□ 0.66
Ddb1Q3U1J4 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC19.18■□□□□ 0.66
Ddb1Q3U1J4 Mir1938-201ENSMUST00000158746 100 ntBASIC19.18■□□□□ 0.66
Ddb1Q3U1J4 Gm3436-201ENSMUST00000179930 840 ntBASIC19.18■□□□□ 0.66
Ddb1Q3U1J4 Gm37917-201ENSMUST00000194711 392 ntBASIC19.18■□□□□ 0.66
Ddb1Q3U1J4 Polr2h-201ENSMUST00000021405 950 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ddb1Q3U1J4 Fkbp2-201ENSMUST00000070878 642 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ddb1Q3U1J4 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC19.18■□□□□ 0.66
Ddb1Q3U1J4 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ddb1Q3U1J4 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ddb1Q3U1J4 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Ddb1Q3U1J4 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ddb1Q3U1J4 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Ddb1Q3U1J4 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Ddb1Q3U1J4 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Ddb1Q3U1J4 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ddb1Q3U1J4 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Ddb1Q3U1J4 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC19.17■□□□□ 0.66
Ddb1Q3U1J4 Tmem219-204ENSMUST00000121532 915 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ddb1Q3U1J4 Atp5j2-202ENSMUST00000161741 955 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ddb1Q3U1J4 Tnnt1-208ENSMUST00000166161 750 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Ddb1Q3U1J4 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Ddb1Q3U1J4 Gm9522-201ENSMUST00000182394 926 ntBASIC19.17■□□□□ 0.66
Ddb1Q3U1J4 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC19.17■□□□□ 0.66
Ddb1Q3U1J4 Rsph9-201ENSMUST00000024762 966 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ddb1Q3U1J4 Akr1b7-201ENSMUST00000007449 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ddb1Q3U1J4 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC19.17■□□□□ 0.66
Ddb1Q3U1J4 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ddb1Q3U1J4 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ddb1Q3U1J4 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ddb1Q3U1J4 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC19.17■□□□□ 0.66
Ddb1Q3U1J4 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Ddb1Q3U1J4 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ddb1Q3U1J4 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ddb1Q3U1J4 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Ddb1Q3U1J4 Gm26596-201ENSMUST00000180464 2655 ntBASIC19.17■□□□□ 0.66
Ddb1Q3U1J4 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ddb1Q3U1J4 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ddb1Q3U1J4 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ddb1Q3U1J4 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ddb1Q3U1J4 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
Ddb1Q3U1J4 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ddb1Q3U1J4 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ddb1Q3U1J4 Gm15824-201ENSMUST00000119516 955 ntBASIC19.16■□□□□ 0.66
Ddb1Q3U1J4 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC19.16■□□□□ 0.66
Ddb1Q3U1J4 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Ddb1Q3U1J4 Gm5479-201ENSMUST00000160578 435 ntBASIC19.16■□□□□ 0.66
Ddb1Q3U1J4 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Ddb1Q3U1J4 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Ddb1Q3U1J4 Gm6266-201ENSMUST00000203844 806 ntBASIC19.16■□□□□ 0.66
Ddb1Q3U1J4 Gm26953-206ENSMUST00000212840 619 ntTSL 5 BASIC19.16■□□□□ 0.66
Ddb1Q3U1J4 Gm16476-201ENSMUST00000221544 139 ntBASIC19.16■□□□□ 0.66
Ddb1Q3U1J4 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ddb1Q3U1J4 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Ddb1Q3U1J4 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ddb1Q3U1J4 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC19.16■□□□□ 0.66
Ddb1Q3U1J4 Lpar5-201ENSMUST00000088292 1393 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ddb1Q3U1J4 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ddb1Q3U1J4 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ddb1Q3U1J4 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ddb1Q3U1J4 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ddb1Q3U1J4 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ddb1Q3U1J4 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC19.15■□□□□ 0.66
Ddb1Q3U1J4 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Ddb1Q3U1J4 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ddb1Q3U1J4 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 30 ms