Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Plpp4-201ENSMUST00000094018 1256 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col9a1Q05722 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Col9a1Q05722 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Col9a1Q05722 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col9a1Q05722 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col9a1Q05722 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col9a1Q05722 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC14.86□□□□□ -0.03
Col9a1Q05722 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col9a1Q05722 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC14.86□□□□□ -0.03
Col9a1Q05722 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Col9a1Q05722 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col9a1Q05722 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC14.86□□□□□ -0.03
Col9a1Q05722 Cyp2t4-202ENSMUST00000164093 1512 ntAPPRIS P2 TSL 5 BASIC14.86□□□□□ -0.03
Col9a1Q05722 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Col9a1Q05722 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col9a1Q05722 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col9a1Q05722 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col9a1Q05722 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col9a1Q05722 AC025913.2-201ENSMUST00000220136 1766 ntBASIC14.85□□□□□ -0.03
Col9a1Q05722 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Col9a1Q05722 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Col9a1Q05722 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
Col9a1Q05722 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
Col9a1Q05722 Gm14263-201ENSMUST00000117955 746 ntBASIC14.85□□□□□ -0.03
Col9a1Q05722 4933405E24Rik-201ENSMUST00000131019 1078 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Col9a1Q05722 Hnf4aos-203ENSMUST00000141329 839 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Col9a1Q05722 Gm15952-202ENSMUST00000144542 556 ntTSL 3 BASIC14.85□□□□□ -0.03
Col9a1Q05722 Gm6244-201ENSMUST00000178732 841 ntBASIC14.85□□□□□ -0.03
Col9a1Q05722 Gm3436-201ENSMUST00000179930 840 ntBASIC14.85□□□□□ -0.03
Col9a1Q05722 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC14.85□□□□□ -0.03
Col9a1Q05722 Gm29013-201ENSMUST00000187431 237 ntBASIC14.85□□□□□ -0.03
Col9a1Q05722 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC14.85□□□□□ -0.03
Col9a1Q05722 Gm37641-201ENSMUST00000193837 239 ntBASIC14.85□□□□□ -0.03
Col9a1Q05722 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Col9a1Q05722 Gm36377-201ENSMUST00000220833 757 ntTSL 2 BASIC14.85□□□□□ -0.03
Col9a1Q05722 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC14.85□□□□□ -0.03
Col9a1Q05722 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col9a1Q05722 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col9a1Q05722 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col9a1Q05722 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
Col9a1Q05722 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col9a1Q05722 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col9a1Q05722 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC14.85□□□□□ -0.03
Col9a1Q05722 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col9a1Q05722 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col9a1Q05722 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC14.85□□□□□ -0.03
Col9a1Q05722 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col9a1Q05722 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col9a1Q05722 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col9a1Q05722 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col9a1Q05722 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Col9a1Q05722 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col9a1Q05722 Gm18719-201ENSMUST00000196696 1413 ntBASIC14.84□□□□□ -0.03
Col9a1Q05722 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC14.84□□□□□ -0.03
Col9a1Q05722 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Col9a1Q05722 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col9a1Q05722 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col9a1Q05722 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Col9a1Q05722 Ldha-214ENSMUST00000210815 1535 ntTSL 5 BASIC14.84□□□□□ -0.03
Col9a1Q05722 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Col9a1Q05722 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col9a1Q05722 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Col9a1Q05722 Mthfsd-206ENSMUST00000133037 1060 ntTSL 5 BASIC14.84□□□□□ -0.03
Col9a1Q05722 Vmn1r-ps144-201ENSMUST00000177291 939 ntBASIC14.84□□□□□ -0.03
Col9a1Q05722 Gm37312-201ENSMUST00000195753 685 ntTSL 5 BASIC14.84□□□□□ -0.03
Col9a1Q05722 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Col9a1Q05722 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col9a1Q05722 Gm17917-201ENSMUST00000218561 953 ntBASIC14.84□□□□□ -0.03
Col9a1Q05722 Gm34084-201ENSMUST00000222236 1298 ntTSL 5 BASIC14.84□□□□□ -0.03
Col9a1Q05722 Oit1-201ENSMUST00000022269 1253 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col9a1Q05722 AC090659.2-201ENSMUST00000225378 1186 ntBASIC14.84□□□□□ -0.03
Col9a1Q05722 Gm9826-201ENSMUST00000029124 1299 ntBASIC14.84□□□□□ -0.03
Col9a1Q05722 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Col9a1Q05722 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col9a1Q05722 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col9a1Q05722 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col9a1Q05722 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col9a1Q05722 Gm9816-201ENSMUST00000122292 1414 ntBASIC14.83□□□□□ -0.03
Col9a1Q05722 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.03
Col9a1Q05722 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC14.83□□□□□ -0.03
Col9a1Q05722 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
Col9a1Q05722 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col9a1Q05722 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Col9a1Q05722 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col9a1Q05722 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col9a1Q05722 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col9a1Q05722 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col9a1Q05722 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col9a1Q05722 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col9a1Q05722 Mir1894-201ENSMUST00000122802 81 ntBASIC14.83□□□□□ -0.04
Col9a1Q05722 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC14.83□□□□□ -0.04
Col9a1Q05722 Gm20479-201ENSMUST00000126587 556 ntAPPRIS P1 TSL 3 BASIC14.83□□□□□ -0.04
Col9a1Q05722 Tbata-209ENSMUST00000148181 1017 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Col9a1Q05722 Gm15904-201ENSMUST00000154515 487 ntTSL 3 BASIC14.83□□□□□ -0.04
Col9a1Q05722 Nat8f4-202ENSMUST00000159755 1129 ntTSL 2 BASIC14.83□□□□□ -0.04
Col9a1Q05722 Baiap2l2-205ENSMUST00000170955 1058 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Col9a1Q05722 Rab10os-207ENSMUST00000179924 823 ntTSL 5 BASIC14.83□□□□□ -0.04
Col9a1Q05722 Gm37986-201ENSMUST00000193285 383 ntBASIC14.83□□□□□ -0.04
Col9a1Q05722 Gm38266-201ENSMUST00000194931 421 ntBASIC14.83□□□□□ -0.04
Col9a1Q05722 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 66 ms