Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Dgkq-201ENSMUST00000053913 4938 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Hmgb1P63158 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Hmgb1P63158 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Hmgb1P63158 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Hmgb1P63158 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
Hmgb1P63158 Sox1ot-202ENSMUST00000186174 7420 ntTSL 5 BASIC16.74■□□□□ 0.27
Hmgb1P63158 AC157650.3-201ENSMUST00000225058 1476 ntBASIC16.74■□□□□ 0.27
Hmgb1P63158 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Hmgb1P63158 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Hmgb1P63158 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Hmgb1P63158 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
Hmgb1P63158 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Hmgb1P63158 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Hmgb1P63158 Gm13830-205ENSMUST00000201195 1155 ntBASIC16.74■□□□□ 0.27
Hmgb1P63158 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC16.74■□□□□ 0.27
Hmgb1P63158 AC122024.2-201ENSMUST00000220086 871 ntBASIC16.74■□□□□ 0.27
Hmgb1P63158 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Hmgb1P63158 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Hmgb1P63158 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Hmgb1P63158 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Hmgb1P63158 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Hmgb1P63158 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC16.74■□□□□ 0.27
Hmgb1P63158 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Hmgb1P63158 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Hmgb1P63158 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
Hmgb1P63158 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Hmgb1P63158 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Hmgb1P63158 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Hmgb1P63158 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Hmgb1P63158 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Hmgb1P63158 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
Hmgb1P63158 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Hmgb1P63158 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Hmgb1P63158 Tgfbr2-202ENSMUST00000061101 8092 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Hmgb1P63158 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Hmgb1P63158 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Hmgb1P63158 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC16.73■□□□□ 0.27
Hmgb1P63158 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC16.73■□□□□ 0.27
Hmgb1P63158 Gm18669-201ENSMUST00000216049 778 ntBASIC16.73■□□□□ 0.27
Hmgb1P63158 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Hmgb1P63158 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Hmgb1P63158 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Hmgb1P63158 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Hmgb1P63158 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Hmgb1P63158 Tmem94-201ENSMUST00000093912 5329 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Hmgb1P63158 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Hmgb1P63158 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Hmgb1P63158 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Hmgb1P63158 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC16.72■□□□□ 0.27
Hmgb1P63158 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
Hmgb1P63158 Fndc3a-201ENSMUST00000089017 6143 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Hmgb1P63158 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Hmgb1P63158 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Hmgb1P63158 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Hmgb1P63158 Rab22a-201ENSMUST00000029024 7155 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Hmgb1P63158 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Hmgb1P63158 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Hmgb1P63158 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Hmgb1P63158 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Hmgb1P63158 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Hmgb1P63158 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC16.72■□□□□ 0.27
Hmgb1P63158 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Hmgb1P63158 Gm38058-201ENSMUST00000194323 4368 ntBASIC16.72■□□□□ 0.27
Hmgb1P63158 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Hmgb1P63158 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Hmgb1P63158 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Hmgb1P63158 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC16.72■□□□□ 0.27
Hmgb1P63158 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
Hmgb1P63158 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Hmgb1P63158 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Hmgb1P63158 Tmco1-204ENSMUST00000195015 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Hmgb1P63158 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Hmgb1P63158 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Hmgb1P63158 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb1P63158 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb1P63158 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb1P63158 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC16.71■□□□□ 0.27
Hmgb1P63158 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb1P63158 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb1P63158 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb1P63158 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb1P63158 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb1P63158 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb1P63158 Dnajc6-205ENSMUST00000106933 5191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb1P63158 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb1P63158 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb1P63158 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb1P63158 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb1P63158 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb1P63158 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
Hmgb1P63158 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb1P63158 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb1P63158 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb1P63158 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC16.71■□□□□ 0.27
Hmgb1P63158 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Hmgb1P63158 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
Hmgb1P63158 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.26
Hmgb1P63158 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
Hmgb1P63158 Gpd1l-204ENSMUST00000146623 4391 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Hmgb1P63158 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 61 ms