Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC12.52□□□□□ -0.4
Sdc1P18828 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.4
Sdc1P18828 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Sdc1P18828 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC12.52□□□□□ -0.4
Sdc1P18828 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Sdc1P18828 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Sdc1P18828 Klhl21-201ENSMUST00000097773 3986 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Sdc1P18828 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
Sdc1P18828 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
Sdc1P18828 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Sdc1P18828 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Sdc1P18828 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Sdc1P18828 Islr2-210ENSMUST00000215950 4109 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
Sdc1P18828 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sdc1P18828 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC12.52□□□□□ -0.41
Sdc1P18828 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sdc1P18828 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Sdc1P18828 Gm29707-201ENSMUST00000196325 491 ntBASIC12.52□□□□□ -0.41
Sdc1P18828 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sdc1P18828 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Sdc1P18828 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Sdc1P18828 Cacna2d1-205ENSMUST00000167946 7436 ntAPPRIS ALT1 TSL 5 BASIC12.52□□□□□ -0.41
Sdc1P18828 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sdc1P18828 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sdc1P18828 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC12.52□□□□□ -0.41
Sdc1P18828 Il2rb-202ENSMUST00000163494 1894 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sdc1P18828 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC12.52□□□□□ -0.41
Sdc1P18828 Itgb3-201ENSMUST00000021028 5784 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sdc1P18828 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sdc1P18828 Mavs-202ENSMUST00000110199 3057 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sdc1P18828 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Sdc1P18828 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sdc1P18828 Igha-202ENSMUST00000194738 2540 ntAPPRIS P5 BASIC12.52□□□□□ -0.41
Sdc1P18828 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sdc1P18828 Pcyox1l-201ENSMUST00000025472 2017 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sdc1P18828 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sdc1P18828 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC12.52□□□□□ -0.41
Sdc1P18828 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sdc1P18828 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sdc1P18828 Psma3-202ENSMUST00000160027 2846 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sdc1P18828 Ate1-201ENSMUST00000033139 4735 ntAPPRIS P4 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sdc1P18828 Kcnc4-201ENSMUST00000009617 3667 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sdc1P18828 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sdc1P18828 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sdc1P18828 AC166574.6-201ENSMUST00000227889 1806 ntBASIC12.51□□□□□ -0.41
Sdc1P18828 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sdc1P18828 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Sdc1P18828 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sdc1P18828 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sdc1P18828 Gdf10-201ENSMUST00000168727 5210 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sdc1P18828 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Sdc1P18828 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC12.51□□□□□ -0.41
Sdc1P18828 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Sdc1P18828 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC12.51□□□□□ -0.41
Sdc1P18828 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC12.51□□□□□ -0.41
Sdc1P18828 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC12.51□□□□□ -0.41
Sdc1P18828 Gm7367-201ENSMUST00000057611 492 ntBASIC12.51□□□□□ -0.41
Sdc1P18828 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Sdc1P18828 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sdc1P18828 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sdc1P18828 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Sdc1P18828 Mtif2-202ENSMUST00000093239 2741 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sdc1P18828 Aqp3-201ENSMUST00000055327 1765 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sdc1P18828 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Sdc1P18828 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Sdc1P18828 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC12.5□□□□□ -0.41
Sdc1P18828 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC12.5□□□□□ -0.41
Sdc1P18828 Mfsd6-201ENSMUST00000087701 3493 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sdc1P18828 Kcnh4-201ENSMUST00000107361 3748 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Sdc1P18828 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sdc1P18828 Pprc1-202ENSMUST00000099392 3956 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Sdc1P18828 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sdc1P18828 Ascc3-201ENSMUST00000035606 7760 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Sdc1P18828 Pctp-201ENSMUST00000020864 2723 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sdc1P18828 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sdc1P18828 Camta2-203ENSMUST00000108544 4632 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sdc1P18828 Eloa-201ENSMUST00000030427 4708 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sdc1P18828 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Sdc1P18828 Klc2-201ENSMUST00000025798 2940 ntTSL 5 BASIC12.5□□□□□ -0.41
Sdc1P18828 Wnk1-203ENSMUST00000088644 11330 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Sdc1P18828 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sdc1P18828 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC12.5□□□□□ -0.41
Sdc1P18828 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sdc1P18828 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC12.5□□□□□ -0.41
Sdc1P18828 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sdc1P18828 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sdc1P18828 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Sdc1P18828 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sdc1P18828 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC12.5□□□□□ -0.41
Sdc1P18828 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sdc1P18828 Rnf144a-201ENSMUST00000020971 5164 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sdc1P18828 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Sdc1P18828 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sdc1P18828 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sdc1P18828 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC12.5□□□□□ -0.41
Sdc1P18828 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sdc1P18828 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Sdc1P18828 Fgd4-211ENSMUST00000162671 2714 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sdc1P18828 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Sdc1P18828 Arpc1b-201ENSMUST00000085679 3105 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 78.6 ms