Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Msx1P13297 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Msx1P13297 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Msx1P13297 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Msx1P13297 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Msx1P13297 Cacnb4-201ENSMUST00000078324 8225 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Msx1P13297 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Msx1P13297 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Msx1P13297 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Msx1P13297 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Msx1P13297 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Msx1P13297 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Msx1P13297 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Msx1P13297 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Msx1P13297 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Msx1P13297 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC14.42□□□□□ -0.1
Msx1P13297 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Msx1P13297 2210408F21Rik-210ENSMUST00000151076 539 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Msx1P13297 Gm2308-201ENSMUST00000166539 1004 ntBASIC14.42□□□□□ -0.1
Msx1P13297 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC14.42□□□□□ -0.1
Msx1P13297 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Msx1P13297 Gm45167-201ENSMUST00000208007 322 ntBASIC14.42□□□□□ -0.1
Msx1P13297 AC159295.1-201ENSMUST00000225326 940 ntBASIC14.42□□□□□ -0.1
Msx1P13297 AC117588.1-201ENSMUST00000228510 999 ntBASIC14.42□□□□□ -0.1
Msx1P13297 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Msx1P13297 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Msx1P13297 Rasgrp1-207ENSMUST00000178884 5104 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Msx1P13297 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Msx1P13297 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Msx1P13297 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Msx1P13297 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Msx1P13297 Arl5c-201ENSMUST00000042971 1571 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Msx1P13297 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Msx1P13297 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Msx1P13297 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Msx1P13297 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Msx1P13297 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Msx1P13297 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Msx1P13297 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Msx1P13297 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Msx1P13297 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Msx1P13297 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Msx1P13297 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Msx1P13297 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Msx1P13297 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Msx1P13297 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Msx1P13297 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Msx1P13297 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Msx1P13297 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Msx1P13297 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Msx1P13297 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Msx1P13297 Gm27300-201ENSMUST00000184085 97 ntBASIC14.41□□□□□ -0.1
Msx1P13297 Gm27335-201ENSMUST00000184758 97 ntBASIC14.41□□□□□ -0.1
Msx1P13297 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC14.41□□□□□ -0.1
Msx1P13297 Tspo-201ENSMUST00000047419 837 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Msx1P13297 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC14.41□□□□□ -0.1
Msx1P13297 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Msx1P13297 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.1
Msx1P13297 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Msx1P13297 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Msx1P13297 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Msx1P13297 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Msx1P13297 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC14.41□□□□□ -0.1
Msx1P13297 Cacna1g-201ENSMUST00000021234 8139 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Msx1P13297 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC14.41□□□□□ -0.1
Msx1P13297 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Msx1P13297 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Msx1P13297 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Msx1P13297 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC14.41□□□□□ -0.1
Msx1P13297 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Msx1P13297 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Msx1P13297 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Msx1P13297 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Msx1P13297 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Msx1P13297 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Msx1P13297 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Msx1P13297 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Msx1P13297 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Msx1P13297 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC14.4□□□□□ -0.1
Msx1P13297 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC14.4□□□□□ -0.1
Msx1P13297 Gm13127-201ENSMUST00000118978 1389 ntBASIC14.4□□□□□ -0.1
Msx1P13297 Fam241b-208ENSMUST00000142796 1135 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Msx1P13297 Gm30684-201ENSMUST00000205632 600 ntTSL 3 BASIC14.4□□□□□ -0.1
Msx1P13297 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Msx1P13297 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC14.4□□□□□ -0.1
Msx1P13297 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Msx1P13297 Gtpbp10-201ENSMUST00000088842 941 ntTSL 5 BASIC14.4□□□□□ -0.1
Msx1P13297 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Msx1P13297 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Msx1P13297 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
Msx1P13297 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC14.4□□□□□ -0.1
Msx1P13297 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Msx1P13297 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Msx1P13297 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Msx1P13297 Gjb1-202ENSMUST00000119080 1513 ntAPPRIS P1 TSL 3 BASIC14.4□□□□□ -0.1
Msx1P13297 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Msx1P13297 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
Msx1P13297 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Msx1P13297 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Msx1P13297 Prkcz2-201ENSMUST00000206136 1756 ntBASIC14.39□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms