Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Chmp6P0C0A3 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Chmp6P0C0A3 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC16.58■□□□□ 0.24
Chmp6P0C0A3 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC16.58■□□□□ 0.24
Chmp6P0C0A3 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Chmp6P0C0A3 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC16.57■□□□□ 0.24
Chmp6P0C0A3 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Chmp6P0C0A3 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Chmp6P0C0A3 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Chmp6P0C0A3 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Chmp6P0C0A3 Gm7669-201ENSMUST00000210184 1603 ntBASIC16.57■□□□□ 0.24
Chmp6P0C0A3 Tdrd6-203ENSMUST00000168073 7062 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Chmp6P0C0A3 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
Chmp6P0C0A3 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC16.57■□□□□ 0.24
Chmp6P0C0A3 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC16.57■□□□□ 0.24
Chmp6P0C0A3 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC16.57■□□□□ 0.24
Chmp6P0C0A3 Gm44771-201ENSMUST00000206975 626 ntBASIC16.57■□□□□ 0.24
Chmp6P0C0A3 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC16.57■□□□□ 0.24
Chmp6P0C0A3 AC122024.2-201ENSMUST00000220086 871 ntBASIC16.57■□□□□ 0.24
Chmp6P0C0A3 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Chmp6P0C0A3 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
Chmp6P0C0A3 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Chmp6P0C0A3 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
Chmp6P0C0A3 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
Chmp6P0C0A3 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Chmp6P0C0A3 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Chmp6P0C0A3 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
Chmp6P0C0A3 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Chmp6P0C0A3 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Chmp6P0C0A3 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
Chmp6P0C0A3 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Chmp6P0C0A3 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Chmp6P0C0A3 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Chmp6P0C0A3 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Chmp6P0C0A3 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Chmp6P0C0A3 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Chmp6P0C0A3 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Chmp6P0C0A3 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Chmp6P0C0A3 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Chmp6P0C0A3 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Chmp6P0C0A3 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC16.56■□□□□ 0.24
Chmp6P0C0A3 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC16.56■□□□□ 0.24
Chmp6P0C0A3 Gm15358-201ENSMUST00000119249 520 ntBASIC16.56■□□□□ 0.24
Chmp6P0C0A3 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC16.56■□□□□ 0.24
Chmp6P0C0A3 Gm15590-201ENSMUST00000078419 552 ntBASIC16.56■□□□□ 0.24
Chmp6P0C0A3 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Chmp6P0C0A3 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Chmp6P0C0A3 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
Chmp6P0C0A3 Col4a1-201ENSMUST00000033898 6615 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Chmp6P0C0A3 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Chmp6P0C0A3 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Chmp6P0C0A3 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Chmp6P0C0A3 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Chmp6P0C0A3 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC16.56■□□□□ 0.24
Chmp6P0C0A3 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Chmp6P0C0A3 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Chmp6P0C0A3 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Chmp6P0C0A3 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
Chmp6P0C0A3 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Chmp6P0C0A3 BC005537-201ENSMUST00000019276 5849 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Chmp6P0C0A3 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Chmp6P0C0A3 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Chmp6P0C0A3 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Chmp6P0C0A3 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Chmp6P0C0A3 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Chmp6P0C0A3 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Chmp6P0C0A3 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Chmp6P0C0A3 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Chmp6P0C0A3 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC16.55■□□□□ 0.24
Chmp6P0C0A3 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC16.55■□□□□ 0.24
Chmp6P0C0A3 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Chmp6P0C0A3 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC16.55■□□□□ 0.24
Chmp6P0C0A3 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Chmp6P0C0A3 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC16.55■□□□□ 0.24
Chmp6P0C0A3 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Chmp6P0C0A3 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC16.55■□□□□ 0.24
Chmp6P0C0A3 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
Chmp6P0C0A3 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Chmp6P0C0A3 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
Chmp6P0C0A3 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Chmp6P0C0A3 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Chmp6P0C0A3 Hectd2-201ENSMUST00000047247 4731 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Chmp6P0C0A3 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC16.55■□□□□ 0.24
Chmp6P0C0A3 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Chmp6P0C0A3 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Chmp6P0C0A3 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC16.54■□□□□ 0.24
Chmp6P0C0A3 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC16.54■□□□□ 0.24
Chmp6P0C0A3 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Chmp6P0C0A3 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Chmp6P0C0A3 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Chmp6P0C0A3 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC16.54■□□□□ 0.24
Chmp6P0C0A3 Diras2-201ENSMUST00000057442 4786 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Chmp6P0C0A3 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Chmp6P0C0A3 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Chmp6P0C0A3 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
Chmp6P0C0A3 Gm6184-201ENSMUST00000120403 1261 ntBASIC16.54■□□□□ 0.24
Chmp6P0C0A3 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Chmp6P0C0A3 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC16.54■□□□□ 0.24
Chmp6P0C0A3 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Chmp6P0C0A3 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 31.4 ms