Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Col3a1P08121 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Col3a1P08121 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC18■□□□□ 0.47
Col3a1P08121 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC18■□□□□ 0.47
Col3a1P08121 Mafg-203ENSMUST00000106181 840 ntAPPRIS P1 TSL 3 BASIC18■□□□□ 0.47
Col3a1P08121 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC18■□□□□ 0.47
Col3a1P08121 Ociad1-210ENSMUST00000202250 800 ntTSL 2 BASIC18■□□□□ 0.47
Col3a1P08121 AC158529.1-201ENSMUST00000223618 239 ntBASIC18■□□□□ 0.47
Col3a1P08121 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Col3a1P08121 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Col3a1P08121 Gm11839-201ENSMUST00000120647 1953 ntBASIC18■□□□□ 0.47
Col3a1P08121 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Col3a1P08121 Rbfox2-209ENSMUST00000228087 1694 ntAPPRIS ALT2 BASIC18■□□□□ 0.47
Col3a1P08121 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Col3a1P08121 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Col3a1P08121 Snx14-206ENSMUST00000173039 2970 ntTSL 5 BASIC17.99■□□□□ 0.47
Col3a1P08121 Cox16-201ENSMUST00000002757 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col3a1P08121 AC159621.2-201ENSMUST00000223519 1326 ntBASIC17.99■□□□□ 0.47
Col3a1P08121 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col3a1P08121 Gm13823-201ENSMUST00000119930 345 ntBASIC17.99■□□□□ 0.47
Col3a1P08121 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC17.99■□□□□ 0.47
Col3a1P08121 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Col3a1P08121 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col3a1P08121 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col3a1P08121 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col3a1P08121 Gm42901-201ENSMUST00000197735 3171 ntBASIC17.99■□□□□ 0.47
Col3a1P08121 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC17.99■□□□□ 0.47
Col3a1P08121 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC17.99■□□□□ 0.47
Col3a1P08121 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col3a1P08121 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Col3a1P08121 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
Col3a1P08121 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC17.98■□□□□ 0.47
Col3a1P08121 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC17.98■□□□□ 0.47
Col3a1P08121 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
Col3a1P08121 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Col3a1P08121 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Col3a1P08121 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Col3a1P08121 Erdr1-204ENSMUST00000179483 688 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Col3a1P08121 Ighv8-7-201ENSMUST00000194349 297 ntBASIC17.98■□□□□ 0.47
Col3a1P08121 Cplx3-202ENSMUST00000215487 594 ntTSL 3 BASIC17.98■□□□□ 0.47
Col3a1P08121 Gm13517-201ENSMUST00000120782 1495 ntBASIC17.98■□□□□ 0.47
Col3a1P08121 Cldn14-204ENSMUST00000169391 1456 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
Col3a1P08121 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
Col3a1P08121 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Col3a1P08121 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC17.97■□□□□ 0.47
Col3a1P08121 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
Col3a1P08121 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Col3a1P08121 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col3a1P08121 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col3a1P08121 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Col3a1P08121 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col3a1P08121 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
Col3a1P08121 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC17.97■□□□□ 0.47
Col3a1P08121 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
Col3a1P08121 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Col3a1P08121 Orai3-202ENSMUST00000118865 768 ntTSL 3 BASIC17.97■□□□□ 0.47
Col3a1P08121 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC17.97■□□□□ 0.47
Col3a1P08121 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Col3a1P08121 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Col3a1P08121 Bpnt1-205ENSMUST00000210277 1226 ntTSL 5 BASIC17.97■□□□□ 0.47
Col3a1P08121 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC17.97■□□□□ 0.47
Col3a1P08121 Hes5-201ENSMUST00000049621 1273 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col3a1P08121 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Col3a1P08121 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC17.97■□□□□ 0.47
Col3a1P08121 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col3a1P08121 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col3a1P08121 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Col3a1P08121 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col3a1P08121 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col3a1P08121 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col3a1P08121 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col3a1P08121 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col3a1P08121 Gm13453-201ENSMUST00000118708 357 ntBASIC17.96■□□□□ 0.47
Col3a1P08121 Ccnh-202ENSMUST00000163600 1055 ntTSL 5 BASIC17.96■□□□□ 0.47
Col3a1P08121 2010015M23Rik-201ENSMUST00000181900 1199 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Col3a1P08121 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC17.96■□□□□ 0.47
Col3a1P08121 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC17.96■□□□□ 0.47
Col3a1P08121 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Col3a1P08121 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col3a1P08121 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col3a1P08121 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col3a1P08121 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col3a1P08121 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col3a1P08121 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
Col3a1P08121 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Col3a1P08121 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col3a1P08121 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Col3a1P08121 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
Col3a1P08121 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
Col3a1P08121 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col3a1P08121 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Col3a1P08121 Gm12428-201ENSMUST00000119844 727 ntBASIC17.95■□□□□ 0.46
Col3a1P08121 Cend1-204ENSMUST00000164387 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col3a1P08121 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col3a1P08121 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC17.95■□□□□ 0.46
Col3a1P08121 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Col3a1P08121 Wdyhv1-203ENSMUST00000226889 394 ntBASIC17.95■□□□□ 0.46
Col3a1P08121 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col3a1P08121 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col3a1P08121 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 47.3 ms