Protein–RNA interactions for Protein: E9Q735

Ube4a, Ubiquitin conjugation factor E4 A, mousemouse

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube4aE9Q735 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ube4aE9Q735 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ube4aE9Q735 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ube4aE9Q735 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ube4aE9Q735 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Ube4aE9Q735 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC18.2■□□□□ 0.5
Ube4aE9Q735 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC18.2■□□□□ 0.5
Ube4aE9Q735 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC18.2■□□□□ 0.5
Ube4aE9Q735 Gm8116-201ENSMUST00000182917 1201 ntBASIC18.2■□□□□ 0.5
Ube4aE9Q735 Gm27618-201ENSMUST00000183671 60 ntBASIC18.2■□□□□ 0.5
Ube4aE9Q735 Gm27321-201ENSMUST00000185021 205 ntBASIC18.2■□□□□ 0.5
Ube4aE9Q735 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Ube4aE9Q735 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ube4aE9Q735 Olfr975-201ENSMUST00000054067 933 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
Ube4aE9Q735 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ube4aE9Q735 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC18.2■□□□□ 0.5
Ube4aE9Q735 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ube4aE9Q735 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ube4aE9Q735 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ube4aE9Q735 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ube4aE9Q735 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ube4aE9Q735 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ube4aE9Q735 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Ube4aE9Q735 Gm13517-201ENSMUST00000120782 1495 ntBASIC18.2■□□□□ 0.5
Ube4aE9Q735 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ube4aE9Q735 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC18.2■□□□□ 0.5
Ube4aE9Q735 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ube4aE9Q735 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC18.19■□□□□ 0.5
Ube4aE9Q735 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ube4aE9Q735 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC18.19■□□□□ 0.5
Ube4aE9Q735 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC18.19■□□□□ 0.5
Ube4aE9Q735 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC18.19■□□□□ 0.5
Ube4aE9Q735 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ube4aE9Q735 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Ube4aE9Q735 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ube4aE9Q735 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ube4aE9Q735 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ube4aE9Q735 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ube4aE9Q735 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC18.19■□□□□ 0.5
Ube4aE9Q735 Gm13015-201ENSMUST00000118674 204 ntBASIC18.19■□□□□ 0.5
Ube4aE9Q735 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC18.19■□□□□ 0.5
Ube4aE9Q735 Cd209f-202ENSMUST00000138439 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ube4aE9Q735 Cd209f-203ENSMUST00000145007 1186 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ube4aE9Q735 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC18.19■□□□□ 0.5
Ube4aE9Q735 Gm29541-201ENSMUST00000191351 678 ntBASIC18.19■□□□□ 0.5
Ube4aE9Q735 Gm18049-201ENSMUST00000208909 581 ntBASIC18.19■□□□□ 0.5
Ube4aE9Q735 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Ube4aE9Q735 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Ube4aE9Q735 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ube4aE9Q735 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ube4aE9Q735 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ube4aE9Q735 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Ube4aE9Q735 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC18.18■□□□□ 0.5
Ube4aE9Q735 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ube4aE9Q735 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ube4aE9Q735 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ube4aE9Q735 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC18.18■□□□□ 0.5
Ube4aE9Q735 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Ube4aE9Q735 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ube4aE9Q735 Eef1akmt4-201ENSMUST00000115522 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ube4aE9Q735 Gm13223-201ENSMUST00000118609 747 ntBASIC18.18■□□□□ 0.5
Ube4aE9Q735 Klk2-ps-201ENSMUST00000205342 571 ntBASIC18.18■□□□□ 0.5
Ube4aE9Q735 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC18.18■□□□□ 0.5
Ube4aE9Q735 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ube4aE9Q735 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ube4aE9Q735 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Ube4aE9Q735 Stra8-203ENSMUST00000114999 1455 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ube4aE9Q735 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ube4aE9Q735 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ube4aE9Q735 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ube4aE9Q735 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC18.18■□□□□ 0.5
Ube4aE9Q735 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Ube4aE9Q735 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ube4aE9Q735 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC18.17■□□□□ 0.5
Ube4aE9Q735 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ube4aE9Q735 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Ube4aE9Q735 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Ube4aE9Q735 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ube4aE9Q735 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ube4aE9Q735 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ube4aE9Q735 Gm15199-201ENSMUST00000129933 542 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Ube4aE9Q735 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC18.17■□□□□ 0.5
Ube4aE9Q735 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Ube4aE9Q735 Rpl32-202ENSMUST00000203816 906 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
Ube4aE9Q735 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Ube4aE9Q735 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ube4aE9Q735 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ube4aE9Q735 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ube4aE9Q735 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ube4aE9Q735 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ube4aE9Q735 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Ube4aE9Q735 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ube4aE9Q735 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ube4aE9Q735 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ube4aE9Q735 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ube4aE9Q735 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ube4aE9Q735 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Ube4aE9Q735 Hivep3-201ENSMUST00000084306 2973 ntBASIC18.16■□□□□ 0.5
Ube4aE9Q735 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ube4aE9Q735 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 25.1 ms