Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Pcdhgb8A0A140LI48 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Pcdhgb8A0A140LI48 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Pcdhgb8A0A140LI48 Srsf10-204ENSMUST00000105853 3058 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
Pcdhgb8A0A140LI48 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Pcdhgb8A0A140LI48 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Pcdhgb8A0A140LI48 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Pcdhgb8A0A140LI48 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC13.79□□□□□ -0.2
Pcdhgb8A0A140LI48 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC13.79□□□□□ -0.2
Pcdhgb8A0A140LI48 Gm44454-201ENSMUST00000198541 138 ntBASIC13.79□□□□□ -0.2
Pcdhgb8A0A140LI48 Gm43347-201ENSMUST00000200226 580 ntBASIC13.79□□□□□ -0.2
Pcdhgb8A0A140LI48 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
Pcdhgb8A0A140LI48 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
Pcdhgb8A0A140LI48 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Pcdhgb8A0A140LI48 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Pcdhgb8A0A140LI48 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Pcdhgb8A0A140LI48 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Pcdhgb8A0A140LI48 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Pcdhgb8A0A140LI48 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Pcdhgb8A0A140LI48 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Pcdhgb8A0A140LI48 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Pcdhgb8A0A140LI48 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Pcdhgb8A0A140LI48 Gm15442-201ENSMUST00000117905 1527 ntBASIC13.79□□□□□ -0.2
Pcdhgb8A0A140LI48 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
Pcdhgb8A0A140LI48 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Pcdhgb8A0A140LI48 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Pcdhgb8A0A140LI48 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
Pcdhgb8A0A140LI48 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Pcdhgb8A0A140LI48 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC13.78□□□□□ -0.2
Pcdhgb8A0A140LI48 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Pcdhgb8A0A140LI48 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Pcdhgb8A0A140LI48 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC13.78□□□□□ -0.2
Pcdhgb8A0A140LI48 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC13.78□□□□□ -0.2
Pcdhgb8A0A140LI48 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC13.78□□□□□ -0.2
Pcdhgb8A0A140LI48 Gm28659-201ENSMUST00000188013 759 ntBASIC13.78□□□□□ -0.2
Pcdhgb8A0A140LI48 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Pcdhgb8A0A140LI48 AC114585.2-202ENSMUST00000228094 426 ntBASIC13.78□□□□□ -0.2
Pcdhgb8A0A140LI48 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
Pcdhgb8A0A140LI48 Asb2-201ENSMUST00000021617 2690 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Pcdhgb8A0A140LI48 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Pcdhgb8A0A140LI48 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
Pcdhgb8A0A140LI48 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Pcdhgb8A0A140LI48 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Pcdhgb8A0A140LI48 Ttll11-201ENSMUST00000028248 3176 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Pcdhgb8A0A140LI48 Map3k9-202ENSMUST00000222322 3303 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
Pcdhgb8A0A140LI48 Pard3-202ENSMUST00000079777 3394 ntTSL 5 BASIC13.78□□□□□ -0.2
Pcdhgb8A0A140LI48 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC13.78□□□□□ -0.2
Pcdhgb8A0A140LI48 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
Pcdhgb8A0A140LI48 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Pcdhgb8A0A140LI48 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Pcdhgb8A0A140LI48 Cflar-204ENSMUST00000114309 2010 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Pcdhgb8A0A140LI48 Lpcat1-208ENSMUST00000223060 2141 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Pcdhgb8A0A140LI48 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC13.78□□□□□ -0.2
Pcdhgb8A0A140LI48 Gm43399-201ENSMUST00000202546 2374 ntBASIC13.78□□□□□ -0.2
Pcdhgb8A0A140LI48 Mocos-201ENSMUST00000068006 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Pcdhgb8A0A140LI48 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
Pcdhgb8A0A140LI48 Col5a1-201ENSMUST00000028280 8406 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Pcdhgb8A0A140LI48 Siglecf-203ENSMUST00000122423 2607 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
Pcdhgb8A0A140LI48 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC13.77□□□□□ -0.21
Pcdhgb8A0A140LI48 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Pcdhgb8A0A140LI48 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Pcdhgb8A0A140LI48 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Pcdhgb8A0A140LI48 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Pcdhgb8A0A140LI48 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Pcdhgb8A0A140LI48 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC13.77□□□□□ -0.21
Pcdhgb8A0A140LI48 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Pcdhgb8A0A140LI48 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Pcdhgb8A0A140LI48 Ralgapb-201ENSMUST00000046274 8366 ntAPPRIS ALT1 TSL 5 BASIC13.77□□□□□ -0.21
Pcdhgb8A0A140LI48 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Pcdhgb8A0A140LI48 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
Pcdhgb8A0A140LI48 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Pcdhgb8A0A140LI48 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC13.77□□□□□ -0.21
Pcdhgb8A0A140LI48 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Pcdhgb8A0A140LI48 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
Pcdhgb8A0A140LI48 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Pcdhgb8A0A140LI48 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Pcdhgb8A0A140LI48 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Pcdhgb8A0A140LI48 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Pcdhgb8A0A140LI48 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
Pcdhgb8A0A140LI48 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
Pcdhgb8A0A140LI48 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC13.76□□□□□ -0.21
Pcdhgb8A0A140LI48 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Pcdhgb8A0A140LI48 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Pcdhgb8A0A140LI48 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Pcdhgb8A0A140LI48 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Pcdhgb8A0A140LI48 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Pcdhgb8A0A140LI48 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC13.76□□□□□ -0.21
Pcdhgb8A0A140LI48 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
Pcdhgb8A0A140LI48 Nsun7-203ENSMUST00000201100 2775 ntAPPRIS P3 TSL 5 BASIC13.76□□□□□ -0.21
Pcdhgb8A0A140LI48 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Pcdhgb8A0A140LI48 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Pcdhgb8A0A140LI48 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Pcdhgb8A0A140LI48 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Pcdhgb8A0A140LI48 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Pcdhgb8A0A140LI48 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC13.76□□□□□ -0.21
Pcdhgb8A0A140LI48 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC13.76□□□□□ -0.21
Pcdhgb8A0A140LI48 Mir8098-201ENSMUST00000184011 137 ntBASIC13.76□□□□□ -0.21
Pcdhgb8A0A140LI48 AC164629.2-201ENSMUST00000217916 270 ntBASIC13.76□□□□□ -0.21
Pcdhgb8A0A140LI48 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Pcdhgb8A0A140LI48 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 36.9 ms