Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Prpf40aQ9R1C7 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Prpf40aQ9R1C7 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Prpf40aQ9R1C7 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Prpf40aQ9R1C7 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Prpf40aQ9R1C7 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.28
Prpf40aQ9R1C7 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Prpf40aQ9R1C7 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
Prpf40aQ9R1C7 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.28
Prpf40aQ9R1C7 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Prpf40aQ9R1C7 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.28
Prpf40aQ9R1C7 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC16.78■□□□□ 0.28
Prpf40aQ9R1C7 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Prpf40aQ9R1C7 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Prpf40aQ9R1C7 Gm18195-201ENSMUST00000207604 706 ntBASIC16.78■□□□□ 0.28
Prpf40aQ9R1C7 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
Prpf40aQ9R1C7 AC161829.1-201ENSMUST00000220298 281 ntBASIC16.78■□□□□ 0.28
Prpf40aQ9R1C7 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Prpf40aQ9R1C7 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC16.78■□□□□ 0.28
Prpf40aQ9R1C7 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Prpf40aQ9R1C7 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Prpf40aQ9R1C7 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Prpf40aQ9R1C7 Prkcz2-201ENSMUST00000206136 1756 ntBASIC16.78■□□□□ 0.28
Prpf40aQ9R1C7 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Prpf40aQ9R1C7 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Prpf40aQ9R1C7 Sez6-202ENSMUST00000093995 4239 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
Prpf40aQ9R1C7 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Prpf40aQ9R1C7 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Prpf40aQ9R1C7 BC005537-201ENSMUST00000019276 5849 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Prpf40aQ9R1C7 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Prpf40aQ9R1C7 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
Prpf40aQ9R1C7 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Prpf40aQ9R1C7 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC16.78■□□□□ 0.28
Prpf40aQ9R1C7 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Prpf40aQ9R1C7 Gm3928-201ENSMUST00000121141 1307 ntBASIC16.77■□□□□ 0.28
Prpf40aQ9R1C7 Tbc1d30-201ENSMUST00000064107 5695 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Prpf40aQ9R1C7 Tead1-201ENSMUST00000059768 9964 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.28
Prpf40aQ9R1C7 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Prpf40aQ9R1C7 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.28
Prpf40aQ9R1C7 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Prpf40aQ9R1C7 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC16.77■□□□□ 0.28
Prpf40aQ9R1C7 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC16.77■□□□□ 0.28
Prpf40aQ9R1C7 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC16.77■□□□□ 0.28
Prpf40aQ9R1C7 AC158538.2-201ENSMUST00000225455 906 ntBASIC16.77■□□□□ 0.28
Prpf40aQ9R1C7 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
Prpf40aQ9R1C7 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Prpf40aQ9R1C7 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
Prpf40aQ9R1C7 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Prpf40aQ9R1C7 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Prpf40aQ9R1C7 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Prpf40aQ9R1C7 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Prpf40aQ9R1C7 Gm10584-201ENSMUST00000207036 2628 ntBASIC16.77■□□□□ 0.27
Prpf40aQ9R1C7 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Prpf40aQ9R1C7 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
Prpf40aQ9R1C7 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
Prpf40aQ9R1C7 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Prpf40aQ9R1C7 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Prpf40aQ9R1C7 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Prpf40aQ9R1C7 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC16.76■□□□□ 0.27
Prpf40aQ9R1C7 Gm14722-201ENSMUST00000118943 689 ntBASIC16.76■□□□□ 0.27
Prpf40aQ9R1C7 Gm7230-201ENSMUST00000173026 815 ntBASIC16.76■□□□□ 0.27
Prpf40aQ9R1C7 Gm27646-201ENSMUST00000183989 110 ntBASIC16.76■□□□□ 0.27
Prpf40aQ9R1C7 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Prpf40aQ9R1C7 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Prpf40aQ9R1C7 Gm37500-201ENSMUST00000192059 1443 ntBASIC16.76■□□□□ 0.27
Prpf40aQ9R1C7 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC16.76■□□□□ 0.27
Prpf40aQ9R1C7 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Prpf40aQ9R1C7 Arl5b-202ENSMUST00000069870 6981 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Prpf40aQ9R1C7 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Prpf40aQ9R1C7 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Prpf40aQ9R1C7 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Prpf40aQ9R1C7 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Prpf40aQ9R1C7 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Prpf40aQ9R1C7 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Prpf40aQ9R1C7 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Prpf40aQ9R1C7 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
Prpf40aQ9R1C7 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC16.75■□□□□ 0.27
Prpf40aQ9R1C7 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC16.75■□□□□ 0.27
Prpf40aQ9R1C7 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Prpf40aQ9R1C7 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Prpf40aQ9R1C7 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
Prpf40aQ9R1C7 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC16.75■□□□□ 0.27
Prpf40aQ9R1C7 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Prpf40aQ9R1C7 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Prpf40aQ9R1C7 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Prpf40aQ9R1C7 Col4a2-201ENSMUST00000033899 6450 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Prpf40aQ9R1C7 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Prpf40aQ9R1C7 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Prpf40aQ9R1C7 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Prpf40aQ9R1C7 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Prpf40aQ9R1C7 2010007H06Rik-202ENSMUST00000186025 4934 ntTSL 2 BASIC16.75■□□□□ 0.27
Prpf40aQ9R1C7 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Prpf40aQ9R1C7 Hectd2-201ENSMUST00000047247 4731 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
Prpf40aQ9R1C7 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Prpf40aQ9R1C7 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Prpf40aQ9R1C7 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Prpf40aQ9R1C7 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Prpf40aQ9R1C7 Foxo3-203ENSMUST00000105502 6848 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Prpf40aQ9R1C7 Megf9-202ENSMUST00000107359 7924 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Prpf40aQ9R1C7 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 40.7 ms