Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
Trim56Q80VI1 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Trim56Q80VI1 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trim56Q80VI1 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trim56Q80VI1 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trim56Q80VI1 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trim56Q80VI1 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
Trim56Q80VI1 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trim56Q80VI1 Gjb1-202ENSMUST00000119080 1513 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
Trim56Q80VI1 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC17.96■□□□□ 0.47
Trim56Q80VI1 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Trim56Q80VI1 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trim56Q80VI1 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trim56Q80VI1 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trim56Q80VI1 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trim56Q80VI1 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.46
Trim56Q80VI1 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
Trim56Q80VI1 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC17.96■□□□□ 0.46
Trim56Q80VI1 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC17.96■□□□□ 0.46
Trim56Q80VI1 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.46
Trim56Q80VI1 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
Trim56Q80VI1 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
Trim56Q80VI1 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Trim56Q80VI1 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim56Q80VI1 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim56Q80VI1 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Trim56Q80VI1 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim56Q80VI1 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Trim56Q80VI1 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim56Q80VI1 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim56Q80VI1 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim56Q80VI1 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim56Q80VI1 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim56Q80VI1 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim56Q80VI1 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Trim56Q80VI1 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Trim56Q80VI1 Gm16198-201ENSMUST00000118766 670 ntBASIC17.95■□□□□ 0.46
Trim56Q80VI1 Slc7a10-203ENSMUST00000135452 629 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Trim56Q80VI1 Mir7036b-201ENSMUST00000184791 63 ntBASIC17.95■□□□□ 0.46
Trim56Q80VI1 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC17.95■□□□□ 0.46
Trim56Q80VI1 AC164567.1-201ENSMUST00000219185 960 ntBASIC17.95■□□□□ 0.46
Trim56Q80VI1 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim56Q80VI1 Tspo-201ENSMUST00000047419 837 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim56Q80VI1 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim56Q80VI1 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
Trim56Q80VI1 Mier2-201ENSMUST00000062855 2562 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim56Q80VI1 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim56Q80VI1 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim56Q80VI1 Gm45212-201ENSMUST00000205831 3403 ntBASIC17.95■□□□□ 0.46
Trim56Q80VI1 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Trim56Q80VI1 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Trim56Q80VI1 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim56Q80VI1 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Trim56Q80VI1 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Trim56Q80VI1 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim56Q80VI1 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim56Q80VI1 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim56Q80VI1 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim56Q80VI1 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC17.94■□□□□ 0.46
Trim56Q80VI1 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim56Q80VI1 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim56Q80VI1 CT010478.1-201ENSMUST00000220747 2787 ntBASIC17.94■□□□□ 0.46
Trim56Q80VI1 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Trim56Q80VI1 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim56Q80VI1 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim56Q80VI1 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC17.94■□□□□ 0.46
Trim56Q80VI1 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC17.94■□□□□ 0.46
Trim56Q80VI1 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC17.94■□□□□ 0.46
Trim56Q80VI1 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC17.94■□□□□ 0.46
Trim56Q80VI1 Thap2-203ENSMUST00000218989 527 ntBASIC17.94■□□□□ 0.46
Trim56Q80VI1 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Trim56Q80VI1 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim56Q80VI1 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim56Q80VI1 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Trim56Q80VI1 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim56Q80VI1 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Trim56Q80VI1 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
Trim56Q80VI1 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim56Q80VI1 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim56Q80VI1 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
Trim56Q80VI1 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim56Q80VI1 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Trim56Q80VI1 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim56Q80VI1 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Trim56Q80VI1 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim56Q80VI1 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
Trim56Q80VI1 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim56Q80VI1 Aig1-202ENSMUST00000105534 617 ntTSL 5 BASIC17.93■□□□□ 0.46
Trim56Q80VI1 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC17.93■□□□□ 0.46
Trim56Q80VI1 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim56Q80VI1 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC17.93■□□□□ 0.46
Trim56Q80VI1 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC17.93■□□□□ 0.46
Trim56Q80VI1 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Trim56Q80VI1 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim56Q80VI1 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim56Q80VI1 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim56Q80VI1 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim56Q80VI1 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC17.93■□□□□ 0.46
Trim56Q80VI1 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim56Q80VI1 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 32.1 ms