Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC19.71■□□□□ 0.75
Trim28Q62318 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC19.71■□□□□ 0.75
Trim28Q62318 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim28Q62318 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim28Q62318 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim28Q62318 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Trim28Q62318 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Trim28Q62318 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim28Q62318 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim28Q62318 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim28Q62318 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim28Q62318 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Trim28Q62318 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim28Q62318 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim28Q62318 Sesn3-201ENSMUST00000034507 1827 ntTSL 5 BASIC19.7■□□□□ 0.74
Trim28Q62318 Cox16-201ENSMUST00000002757 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim28Q62318 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim28Q62318 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC19.7■□□□□ 0.74
Trim28Q62318 Tmem217-202ENSMUST00000168339 812 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim28Q62318 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC19.7■□□□□ 0.74
Trim28Q62318 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC19.7■□□□□ 0.74
Trim28Q62318 Gm5779-201ENSMUST00000218467 910 ntBASIC19.7■□□□□ 0.74
Trim28Q62318 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
Trim28Q62318 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
Trim28Q62318 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim28Q62318 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim28Q62318 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC19.7■□□□□ 0.74
Trim28Q62318 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Trim28Q62318 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim28Q62318 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Trim28Q62318 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim28Q62318 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Trim28Q62318 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Trim28Q62318 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim28Q62318 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Trim28Q62318 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim28Q62318 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim28Q62318 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim28Q62318 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim28Q62318 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim28Q62318 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Trim28Q62318 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim28Q62318 Gm22175-201ENSMUST00000175007 78 ntBASIC19.69■□□□□ 0.74
Trim28Q62318 Gm24158-201ENSMUST00000175263 71 ntBASIC19.69■□□□□ 0.74
Trim28Q62318 Cd3g-201ENSMUST00000002101 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim28Q62318 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Trim28Q62318 AC154767.3-201ENSMUST00000225150 1342 ntBASIC19.69■□□□□ 0.74
Trim28Q62318 Gm26688-201ENSMUST00000181176 1568 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Trim28Q62318 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim28Q62318 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
Trim28Q62318 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC19.69■□□□□ 0.74
Trim28Q62318 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim28Q62318 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC19.69■□□□□ 0.74
Trim28Q62318 Oas1a-201ENSMUST00000080322 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim28Q62318 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim28Q62318 Nsg2-201ENSMUST00000020537 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim28Q62318 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim28Q62318 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC19.68■□□□□ 0.74
Trim28Q62318 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Trim28Q62318 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Trim28Q62318 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC19.68■□□□□ 0.74
Trim28Q62318 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Trim28Q62318 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
Trim28Q62318 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Trim28Q62318 AC124732.2-201ENSMUST00000221977 316 ntBASIC19.68■□□□□ 0.74
Trim28Q62318 Commd9-201ENSMUST00000028584 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim28Q62318 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim28Q62318 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim28Q62318 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC19.68■□□□□ 0.74
Trim28Q62318 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim28Q62318 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim28Q62318 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim28Q62318 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim28Q62318 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Trim28Q62318 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim28Q62318 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Trim28Q62318 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim28Q62318 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Trim28Q62318 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Trim28Q62318 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim28Q62318 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim28Q62318 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim28Q62318 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Trim28Q62318 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Trim28Q62318 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim28Q62318 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim28Q62318 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Trim28Q62318 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC19.67■□□□□ 0.74
Trim28Q62318 Gm8116-201ENSMUST00000182917 1201 ntBASIC19.67■□□□□ 0.74
Trim28Q62318 Gm10576-201ENSMUST00000191927 825 ntBASIC19.67■□□□□ 0.74
Trim28Q62318 Gm38225-201ENSMUST00000194001 393 ntBASIC19.67■□□□□ 0.74
Trim28Q62318 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Trim28Q62318 AC158982.1-201ENSMUST00000228377 901 ntBASIC19.67■□□□□ 0.74
Trim28Q62318 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim28Q62318 Tfap2a-203ENSMUST00000223869 2037 ntBASIC19.67■□□□□ 0.74
Trim28Q62318 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim28Q62318 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim28Q62318 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC19.67■□□□□ 0.74
Trim28Q62318 Tcf21-202ENSMUST00000218002 1788 ntBASIC19.67■□□□□ 0.74
Trim28Q62318 Adipor1-201ENSMUST00000027727 3123 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 30.6 ms