Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Upf3aQ3ULJ3 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
Upf3aQ3ULJ3 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC16■□□□□ 0.15
Upf3aQ3ULJ3 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC16■□□□□ 0.15
Upf3aQ3ULJ3 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
Upf3aQ3ULJ3 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Upf3aQ3ULJ3 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
Upf3aQ3ULJ3 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Upf3aQ3ULJ3 Dcaf13-201ENSMUST00000022909 1551 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Upf3aQ3ULJ3 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC16■□□□□ 0.15
Upf3aQ3ULJ3 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC16■□□□□ 0.15
Upf3aQ3ULJ3 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Upf3aQ3ULJ3 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Upf3aQ3ULJ3 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Upf3aQ3ULJ3 AC154231.1-201ENSMUST00000220564 2175 ntBASIC15.99■□□□□ 0.15
Upf3aQ3ULJ3 Rcn3-208ENSMUST00000211352 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Upf3aQ3ULJ3 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Upf3aQ3ULJ3 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC15.99■□□□□ 0.15
Upf3aQ3ULJ3 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Upf3aQ3ULJ3 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
Upf3aQ3ULJ3 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
Upf3aQ3ULJ3 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC15.99■□□□□ 0.15
Upf3aQ3ULJ3 Gm6415-201ENSMUST00000118488 348 ntBASIC15.99■□□□□ 0.15
Upf3aQ3ULJ3 Gm13223-201ENSMUST00000118609 747 ntBASIC15.99■□□□□ 0.15
Upf3aQ3ULJ3 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC15.99■□□□□ 0.15
Upf3aQ3ULJ3 Gm9824-201ENSMUST00000178707 561 ntBASIC15.99■□□□□ 0.15
Upf3aQ3ULJ3 Gm38225-201ENSMUST00000194001 393 ntBASIC15.99■□□□□ 0.15
Upf3aQ3ULJ3 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Upf3aQ3ULJ3 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Upf3aQ3ULJ3 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Upf3aQ3ULJ3 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Upf3aQ3ULJ3 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Upf3aQ3ULJ3 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC15.99■□□□□ 0.15
Upf3aQ3ULJ3 Crhr2-209ENSMUST00000213026 1443 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Upf3aQ3ULJ3 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
Upf3aQ3ULJ3 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Upf3aQ3ULJ3 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Upf3aQ3ULJ3 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Upf3aQ3ULJ3 Pltp-201ENSMUST00000059954 1809 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Upf3aQ3ULJ3 Adamts17-202ENSMUST00000107478 6416 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
Upf3aQ3ULJ3 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Upf3aQ3ULJ3 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC15.98■□□□□ 0.15
Upf3aQ3ULJ3 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC15.98■□□□□ 0.15
Upf3aQ3ULJ3 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Upf3aQ3ULJ3 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Upf3aQ3ULJ3 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC15.98■□□□□ 0.15
Upf3aQ3ULJ3 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Upf3aQ3ULJ3 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
Upf3aQ3ULJ3 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
Upf3aQ3ULJ3 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC15.98■□□□□ 0.15
Upf3aQ3ULJ3 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC15.98■□□□□ 0.15
Upf3aQ3ULJ3 Gm15483-201ENSMUST00000120338 456 ntBASIC15.98■□□□□ 0.15
Upf3aQ3ULJ3 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC15.98■□□□□ 0.15
Upf3aQ3ULJ3 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Upf3aQ3ULJ3 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC15.98■□□□□ 0.15
Upf3aQ3ULJ3 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Upf3aQ3ULJ3 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
Upf3aQ3ULJ3 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Upf3aQ3ULJ3 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Upf3aQ3ULJ3 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC15.98■□□□□ 0.15
Upf3aQ3ULJ3 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Upf3aQ3ULJ3 Gm5626-201ENSMUST00000222151 1058 ntBASIC15.98■□□□□ 0.15
Upf3aQ3ULJ3 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Upf3aQ3ULJ3 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
Upf3aQ3ULJ3 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Upf3aQ3ULJ3 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Upf3aQ3ULJ3 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Upf3aQ3ULJ3 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Upf3aQ3ULJ3 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
Upf3aQ3ULJ3 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Upf3aQ3ULJ3 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Upf3aQ3ULJ3 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Upf3aQ3ULJ3 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Upf3aQ3ULJ3 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
Upf3aQ3ULJ3 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Upf3aQ3ULJ3 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
Upf3aQ3ULJ3 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC15.97■□□□□ 0.15
Upf3aQ3ULJ3 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Upf3aQ3ULJ3 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
Upf3aQ3ULJ3 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
Upf3aQ3ULJ3 Gm12428-201ENSMUST00000119844 727 ntBASIC15.97■□□□□ 0.15
Upf3aQ3ULJ3 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC15.97■□□□□ 0.15
Upf3aQ3ULJ3 Gm27306-201ENSMUST00000183970 107 ntBASIC15.97■□□□□ 0.15
Upf3aQ3ULJ3 CT025535.1-201ENSMUST00000227172 491 ntBASIC15.97■□□□□ 0.15
Upf3aQ3ULJ3 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Upf3aQ3ULJ3 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Upf3aQ3ULJ3 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Upf3aQ3ULJ3 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Upf3aQ3ULJ3 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Upf3aQ3ULJ3 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
Upf3aQ3ULJ3 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Upf3aQ3ULJ3 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Upf3aQ3ULJ3 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC15.97■□□□□ 0.15
Upf3aQ3ULJ3 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Upf3aQ3ULJ3 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Upf3aQ3ULJ3 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Upf3aQ3ULJ3 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Upf3aQ3ULJ3 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Upf3aQ3ULJ3 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Upf3aQ3ULJ3 Hivep3-201ENSMUST00000084306 2973 ntBASIC15.96■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms