Protein–RNA interactions for Protein: Q3U827

Rnf180, E3 ubiquitin-protein ligase RNF180, mousemouse

Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf180Q3U827 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Rnf180Q3U827 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rnf180Q3U827 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Rnf180Q3U827 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Rnf180Q3U827 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Rnf180Q3U827 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC17.74■□□□□ 0.43
Rnf180Q3U827 Dctn4-202ENSMUST00000223590 1530 ntBASIC17.74■□□□□ 0.43
Rnf180Q3U827 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
Rnf180Q3U827 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
Rnf180Q3U827 Gnpda2-207ENSMUST00000173927 1011 ntAPPRIS ALT1 TSL 5 BASIC17.74■□□□□ 0.43
Rnf180Q3U827 Fam24a-203ENSMUST00000207784 600 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Rnf180Q3U827 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC17.74■□□□□ 0.43
Rnf180Q3U827 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC17.74■□□□□ 0.43
Rnf180Q3U827 AC121804.3-201ENSMUST00000223420 295 ntBASIC17.74■□□□□ 0.43
Rnf180Q3U827 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Rnf180Q3U827 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Rnf180Q3U827 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Rnf180Q3U827 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Rnf180Q3U827 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Rnf180Q3U827 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Rnf180Q3U827 4930528D03Rik-203ENSMUST00000225577 1348 ntBASIC17.73■□□□□ 0.43
Rnf180Q3U827 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Rnf180Q3U827 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rnf180Q3U827 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
Rnf180Q3U827 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rnf180Q3U827 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC17.73■□□□□ 0.43
Rnf180Q3U827 Trim34b-201ENSMUST00000106847 1827 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rnf180Q3U827 Prss45-201ENSMUST00000011391 1232 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rnf180Q3U827 Drap1-210ENSMUST00000148219 727 ntTSL 3 BASIC17.73■□□□□ 0.43
Rnf180Q3U827 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Rnf180Q3U827 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Rnf180Q3U827 Gm8652-201ENSMUST00000181363 964 ntBASIC17.73■□□□□ 0.43
Rnf180Q3U827 9130604C24Rik-201ENSMUST00000197965 956 ntBASIC17.73■□□□□ 0.43
Rnf180Q3U827 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Rnf180Q3U827 Rdh5-201ENSMUST00000026406 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rnf180Q3U827 Rpl10a-201ENSMUST00000042334 829 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rnf180Q3U827 Olfr54-201ENSMUST00000072152 942 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
Rnf180Q3U827 Olfr1375-201ENSMUST00000073543 942 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
Rnf180Q3U827 Coro6-203ENSMUST00000079770 1298 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Rnf180Q3U827 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC17.73■□□□□ 0.43
Rnf180Q3U827 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rnf180Q3U827 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Rnf180Q3U827 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC17.73■□□□□ 0.43
Rnf180Q3U827 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rnf180Q3U827 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
Rnf180Q3U827 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rnf180Q3U827 Rnaseh2a-210ENSMUST00000147812 1532 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Rnf180Q3U827 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rnf180Q3U827 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rnf180Q3U827 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rnf180Q3U827 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Rnf180Q3U827 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Rnf180Q3U827 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rnf180Q3U827 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC17.72■□□□□ 0.43
Rnf180Q3U827 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Rnf180Q3U827 Gm11684-201ENSMUST00000144975 757 ntTSL 5 BASIC17.72■□□□□ 0.43
Rnf180Q3U827 Gm22902-201ENSMUST00000158488 302 ntBASIC17.72■□□□□ 0.43
Rnf180Q3U827 Txnl4b-202ENSMUST00000178445 830 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rnf180Q3U827 AC125117.1-201ENSMUST00000228121 468 ntBASIC17.72■□□□□ 0.43
Rnf180Q3U827 Duoxa1-201ENSMUST00000028653 1026 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
Rnf180Q3U827 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rnf180Q3U827 Cebpe-201ENSMUST00000064290 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rnf180Q3U827 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rnf180Q3U827 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rnf180Q3U827 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rnf180Q3U827 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rnf180Q3U827 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Rnf180Q3U827 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rnf180Q3U827 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rnf180Q3U827 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Rnf180Q3U827 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Rnf180Q3U827 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Rnf180Q3U827 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Rnf180Q3U827 Gm45293-201ENSMUST00000209754 1812 ntBASIC17.71■□□□□ 0.43
Rnf180Q3U827 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC17.71■□□□□ 0.43
Rnf180Q3U827 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC17.71■□□□□ 0.43
Rnf180Q3U827 Gm829-202ENSMUST00000146622 722 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Rnf180Q3U827 Gm26083-201ENSMUST00000157904 193 ntBASIC17.71■□□□□ 0.43
Rnf180Q3U827 Mir8109-201ENSMUST00000184375 117 ntBASIC17.71■□□□□ 0.43
Rnf180Q3U827 Rpl7a-ps10-201ENSMUST00000190579 798 ntBASIC17.71■□□□□ 0.43
Rnf180Q3U827 Gm43138-201ENSMUST00000199123 708 ntBASIC17.71■□□□□ 0.43
Rnf180Q3U827 Gm33460-201ENSMUST00000212286 536 ntTSL 5 BASIC17.71■□□□□ 0.43
Rnf180Q3U827 Gm45880-201ENSMUST00000213041 853 ntBASIC17.71■□□□□ 0.43
Rnf180Q3U827 Gm8973-201ENSMUST00000079818 315 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Rnf180Q3U827 Rpl7a-ps3-201ENSMUST00000090170 796 ntBASIC17.71■□□□□ 0.43
Rnf180Q3U827 Mir433-201ENSMUST00000093564 124 ntBASIC17.71■□□□□ 0.43
Rnf180Q3U827 Rpl7a-ps5-201ENSMUST00000095218 807 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Rnf180Q3U827 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Rnf180Q3U827 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Rnf180Q3U827 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Rnf180Q3U827 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Rnf180Q3U827 4933436I20Rik-202ENSMUST00000190615 1509 ntTSL 5 BASIC17.71■□□□□ 0.43
Rnf180Q3U827 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Rnf180Q3U827 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC17.71■□□□□ 0.43
Rnf180Q3U827 Cd300lf-203ENSMUST00000106562 1762 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Rnf180Q3U827 Tubg2-201ENSMUST00000043654 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Rnf180Q3U827 2310026I22Rik-201ENSMUST00000180941 1300 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
Rnf180Q3U827 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Rnf180Q3U827 Allc-202ENSMUST00000110917 1384 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rnf180Q3U827 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 75.4 ms