Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Mul1-203ENSMUST00000105815 473 ntTSL 3 BASIC19.24■□□□□ 0.67
Ddb1Q3U1J4 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC19.24■□□□□ 0.67
Ddb1Q3U1J4 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC19.24■□□□□ 0.67
Ddb1Q3U1J4 Gm13829-201ENSMUST00000119600 138 ntBASIC19.24■□□□□ 0.67
Ddb1Q3U1J4 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC19.24■□□□□ 0.67
Ddb1Q3U1J4 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ddb1Q3U1J4 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Ddb1Q3U1J4 Gm10535-201ENSMUST00000182275 915 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Ddb1Q3U1J4 Poc1a-205ENSMUST00000191434 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ddb1Q3U1J4 Gm45668-201ENSMUST00000211271 493 ntBASIC19.24■□□□□ 0.67
Ddb1Q3U1J4 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ddb1Q3U1J4 Gm46209-201ENSMUST00000217912 553 ntBASIC19.24■□□□□ 0.67
Ddb1Q3U1J4 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC19.24■□□□□ 0.67
Ddb1Q3U1J4 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ddb1Q3U1J4 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ddb1Q3U1J4 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ddb1Q3U1J4 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
Ddb1Q3U1J4 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ddb1Q3U1J4 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ddb1Q3U1J4 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ddb1Q3U1J4 Zdhhc19-201ENSMUST00000064192 1323 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ddb1Q3U1J4 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ddb1Q3U1J4 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ddb1Q3U1J4 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ddb1Q3U1J4 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC19.23■□□□□ 0.67
Ddb1Q3U1J4 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ddb1Q3U1J4 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ddb1Q3U1J4 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ddb1Q3U1J4 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ddb1Q3U1J4 Gm6756-201ENSMUST00000180647 1620 ntBASIC19.23■□□□□ 0.67
Ddb1Q3U1J4 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ddb1Q3U1J4 Tmem80-205ENSMUST00000132061 667 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
Ddb1Q3U1J4 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC19.23■□□□□ 0.67
Ddb1Q3U1J4 Gm13066-201ENSMUST00000145263 884 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Ddb1Q3U1J4 Gm16000-201ENSMUST00000146657 447 ntTSL 2 BASIC19.23■□□□□ 0.67
Ddb1Q3U1J4 Baiap2l2-205ENSMUST00000170955 1058 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Ddb1Q3U1J4 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
Ddb1Q3U1J4 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Ddb1Q3U1J4 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC19.23■□□□□ 0.67
Ddb1Q3U1J4 Isca2-201ENSMUST00000021667 883 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ddb1Q3U1J4 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ddb1Q3U1J4 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ddb1Q3U1J4 Gm15823-201ENSMUST00000064305 670 ntBASIC19.23■□□□□ 0.67
Ddb1Q3U1J4 Slc22a18-201ENSMUST00000052348 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ddb1Q3U1J4 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ddb1Q3U1J4 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Ddb1Q3U1J4 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Ddb1Q3U1J4 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC19.23■□□□□ 0.67
Ddb1Q3U1J4 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ddb1Q3U1J4 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ddb1Q3U1J4 AC164565.1-201ENSMUST00000217520 1484 ntBASIC19.22■□□□□ 0.67
Ddb1Q3U1J4 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ddb1Q3U1J4 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ddb1Q3U1J4 Dyx1c1-202ENSMUST00000098567 1612 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Ddb1Q3U1J4 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ddb1Q3U1J4 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ddb1Q3U1J4 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
Ddb1Q3U1J4 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ddb1Q3U1J4 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ddb1Q3U1J4 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ddb1Q3U1J4 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC19.22■□□□□ 0.67
Ddb1Q3U1J4 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
Ddb1Q3U1J4 Lrcol1-202ENSMUST00000185691 764 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ddb1Q3U1J4 Gm9899-201ENSMUST00000065519 555 ntBASIC19.22■□□□□ 0.67
Ddb1Q3U1J4 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Ddb1Q3U1J4 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC19.22■□□□□ 0.67
Ddb1Q3U1J4 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ddb1Q3U1J4 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ddb1Q3U1J4 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC19.22■□□□□ 0.67
Ddb1Q3U1J4 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Ddb1Q3U1J4 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ddb1Q3U1J4 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ddb1Q3U1J4 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ddb1Q3U1J4 Wdyhv1-201ENSMUST00000067563 1383 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ddb1Q3U1J4 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ddb1Q3U1J4 AC069562.2-201ENSMUST00000224644 2146 ntBASIC19.21■□□□□ 0.67
Ddb1Q3U1J4 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ddb1Q3U1J4 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Ddb1Q3U1J4 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ddb1Q3U1J4 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
Ddb1Q3U1J4 Gm31728-201ENSMUST00000192164 435 ntTSL 3 BASIC19.21■□□□□ 0.67
Ddb1Q3U1J4 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ddb1Q3U1J4 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ddb1Q3U1J4 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC19.21■□□□□ 0.67
Ddb1Q3U1J4 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
Ddb1Q3U1J4 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ddb1Q3U1J4 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ddb1Q3U1J4 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Ddb1Q3U1J4 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ddb1Q3U1J4 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ddb1Q3U1J4 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ddb1Q3U1J4 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ddb1Q3U1J4 Olfr160-203ENSMUST00000215727 1667 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Ddb1Q3U1J4 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ddb1Q3U1J4 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ddb1Q3U1J4 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ddb1Q3U1J4 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ddb1Q3U1J4 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ddb1Q3U1J4 Gm15653-201ENSMUST00000119247 907 ntBASIC19.2■□□□□ 0.66
Ddb1Q3U1J4 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms