Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sox9Q04887 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sox9Q04887 Olfr533-202ENSMUST00000211093 2397 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
Sox9Q04887 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC15.69■□□□□ 0.1
Sox9Q04887 CT010478.1-201ENSMUST00000220747 2787 ntBASIC15.69■□□□□ 0.1
Sox9Q04887 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Sox9Q04887 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Sox9Q04887 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC15.69■□□□□ 0.1
Sox9Q04887 Gm16026-204ENSMUST00000162652 683 ntBASIC15.69■□□□□ 0.1
Sox9Q04887 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC15.69■□□□□ 0.1
Sox9Q04887 Crip2-202ENSMUST00000196015 772 ntTSL 3 BASIC15.69■□□□□ 0.1
Sox9Q04887 Gm42902-201ENSMUST00000199508 662 ntTSL 5 BASIC15.69■□□□□ 0.1
Sox9Q04887 Gm45552-201ENSMUST00000209340 778 ntTSL 3 BASIC15.69■□□□□ 0.1
Sox9Q04887 Gm9908-201ENSMUST00000211534 448 ntBASIC15.69■□□□□ 0.1
Sox9Q04887 Polr2h-201ENSMUST00000021405 950 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sox9Q04887 1700020A23Rik-201ENSMUST00000028898 712 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sox9Q04887 Pdlim7-203ENSMUST00000069968 1006 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Sox9Q04887 Fkbp2-201ENSMUST00000070878 642 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sox9Q04887 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sox9Q04887 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sox9Q04887 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC15.69■□□□□ 0.1
Sox9Q04887 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sox9Q04887 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sox9Q04887 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sox9Q04887 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Sox9Q04887 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Sox9Q04887 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Sox9Q04887 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC15.69■□□□□ 0.1
Sox9Q04887 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
Sox9Q04887 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Sox9Q04887 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC15.69■□□□□ 0.1
Sox9Q04887 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC15.68■□□□□ 0.1
Sox9Q04887 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Sox9Q04887 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC15.68■□□□□ 0.1
Sox9Q04887 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Sox9Q04887 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Sox9Q04887 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Sox9Q04887 Gm42918-201ENSMUST00000199249 1580 ntBASIC15.68■□□□□ 0.1
Sox9Q04887 Tmem80-205ENSMUST00000132061 667 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
Sox9Q04887 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Sox9Q04887 Tnnt1-208ENSMUST00000166161 750 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Sox9Q04887 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Sox9Q04887 Lrcol1-202ENSMUST00000185691 764 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Sox9Q04887 Gm33337-201ENSMUST00000219594 228 ntTSL 3 BASIC15.68■□□□□ 0.1
Sox9Q04887 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Sox9Q04887 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Sox9Q04887 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Sox9Q04887 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Sox9Q04887 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Sox9Q04887 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Sox9Q04887 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Sox9Q04887 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Sox9Q04887 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Sox9Q04887 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Sox9Q04887 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Sox9Q04887 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Sox9Q04887 Gm9115-201ENSMUST00000120192 1348 ntBASIC15.68■□□□□ 0.1
Sox9Q04887 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Sox9Q04887 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Sox9Q04887 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sox9Q04887 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sox9Q04887 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
Sox9Q04887 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Sox9Q04887 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Sox9Q04887 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sox9Q04887 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sox9Q04887 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC15.67■□□□□ 0.1
Sox9Q04887 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sox9Q04887 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Sox9Q04887 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sox9Q04887 Wdyhv1-201ENSMUST00000067563 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sox9Q04887 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC15.67■□□□□ 0.1
Sox9Q04887 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC15.67■□□□□ 0.1
Sox9Q04887 Gm4204-201ENSMUST00000110798 1231 ntBASIC15.67■□□□□ 0.1
Sox9Q04887 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC15.67■□□□□ 0.1
Sox9Q04887 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC15.67■□□□□ 0.1
Sox9Q04887 Gm15483-201ENSMUST00000120338 456 ntBASIC15.67■□□□□ 0.1
Sox9Q04887 Gm29667-201ENSMUST00000190817 490 ntBASIC15.67■□□□□ 0.1
Sox9Q04887 Gm37267-201ENSMUST00000194222 681 ntTSL 2 BASIC15.67■□□□□ 0.1
Sox9Q04887 Gm6266-201ENSMUST00000203844 806 ntBASIC15.67■□□□□ 0.1
Sox9Q04887 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sox9Q04887 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sox9Q04887 Olfr463-201ENSMUST00000081417 936 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
Sox9Q04887 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC15.67■□□□□ 0.1
Sox9Q04887 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sox9Q04887 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sox9Q04887 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sox9Q04887 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sox9Q04887 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sox9Q04887 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sox9Q04887 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sox9Q04887 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sox9Q04887 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sox9Q04887 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sox9Q04887 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Sox9Q04887 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Sox9Q04887 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Sox9Q04887 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Sox9Q04887 Asic1-205ENSMUST00000228185 1818 ntBASIC15.66■□□□□ 0.1
Sox9Q04887 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 33.9 ms