Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC12.99□□□□□ -0.33
Col8a1Q00780 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col8a1Q00780 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col8a1Q00780 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Col8a1Q00780 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC12.99□□□□□ -0.33
Col8a1Q00780 Gm6473-201ENSMUST00000188572 1210 ntBASIC12.99□□□□□ -0.33
Col8a1Q00780 Gm18187-201ENSMUST00000196476 984 ntBASIC12.99□□□□□ -0.33
Col8a1Q00780 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC12.99□□□□□ -0.33
Col8a1Q00780 Gm19164-201ENSMUST00000210667 640 ntBASIC12.99□□□□□ -0.33
Col8a1Q00780 AC135669.1-201ENSMUST00000213585 412 ntBASIC12.99□□□□□ -0.33
Col8a1Q00780 AC125350.2-201ENSMUST00000224737 727 ntBASIC12.99□□□□□ -0.33
Col8a1Q00780 CT025555.1-201ENSMUST00000225901 1217 ntBASIC12.99□□□□□ -0.33
Col8a1Q00780 AC131710.1-201ENSMUST00000228336 990 ntBASIC12.99□□□□□ -0.33
Col8a1Q00780 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC12.99□□□□□ -0.33
Col8a1Q00780 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Col8a1Q00780 Mast3-201ENSMUST00000166004 5305 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Col8a1Q00780 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col8a1Q00780 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Col8a1Q00780 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Col8a1Q00780 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col8a1Q00780 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col8a1Q00780 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Col8a1Q00780 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col8a1Q00780 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col8a1Q00780 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
Col8a1Q00780 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col8a1Q00780 Socs7-201ENSMUST00000045540 7015 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col8a1Q00780 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col8a1Q00780 Kcnq2-217ENSMUST00000149964 8209 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col8a1Q00780 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col8a1Q00780 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Col8a1Q00780 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col8a1Q00780 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col8a1Q00780 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col8a1Q00780 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col8a1Q00780 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col8a1Q00780 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col8a1Q00780 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col8a1Q00780 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col8a1Q00780 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col8a1Q00780 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col8a1Q00780 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC12.98□□□□□ -0.33
Col8a1Q00780 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC12.98□□□□□ -0.33
Col8a1Q00780 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Col8a1Q00780 Ube2f-210ENSMUST00000191368 1110 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col8a1Q00780 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Col8a1Q00780 AC130829.1-201ENSMUST00000221548 494 ntBASIC12.98□□□□□ -0.33
Col8a1Q00780 Prg3-201ENSMUST00000028466 949 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col8a1Q00780 Ifng-201ENSMUST00000068592 1208 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col8a1Q00780 Gm6594-201ENSMUST00000097278 288 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Col8a1Q00780 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC12.98□□□□□ -0.33
Col8a1Q00780 Mbtps2-201ENSMUST00000058098 4797 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Col8a1Q00780 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Col8a1Q00780 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col8a1Q00780 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col8a1Q00780 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col8a1Q00780 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC12.98□□□□□ -0.33
Col8a1Q00780 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col8a1Q00780 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col8a1Q00780 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col8a1Q00780 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col8a1Q00780 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Col8a1Q00780 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col8a1Q00780 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
Col8a1Q00780 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col8a1Q00780 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Col8a1Q00780 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col8a1Q00780 E330009J07Rik-202ENSMUST00000101492 6742 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col8a1Q00780 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Col8a1Q00780 Tor1aip2-205ENSMUST00000111757 6118 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col8a1Q00780 Adgrl1-210ENSMUST00000152978 5734 ntTSL 5 BASIC12.97□□□□□ -0.33
Col8a1Q00780 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC12.97□□□□□ -0.33
Col8a1Q00780 Ghr-203ENSMUST00000110698 1171 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Col8a1Q00780 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC12.97□□□□□ -0.33
Col8a1Q00780 Gm6415-201ENSMUST00000118488 348 ntBASIC12.97□□□□□ -0.33
Col8a1Q00780 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC12.97□□□□□ -0.33
Col8a1Q00780 Cyba-201ENSMUST00000017604 744 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col8a1Q00780 Gm9794-201ENSMUST00000202370 423 ntBASIC12.97□□□□□ -0.33
Col8a1Q00780 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Col8a1Q00780 Ccdc182-201ENSMUST00000037268 1204 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
Col8a1Q00780 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col8a1Q00780 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col8a1Q00780 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col8a1Q00780 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col8a1Q00780 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
Col8a1Q00780 Syt7-205ENSMUST00000224135 1557 ntBASIC12.97□□□□□ -0.33
Col8a1Q00780 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col8a1Q00780 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col8a1Q00780 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col8a1Q00780 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Col8a1Q00780 Itfg2-206ENSMUST00000203374 1394 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
Col8a1Q00780 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col8a1Q00780 Kcnc1-201ENSMUST00000025202 7760 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Col8a1Q00780 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
Col8a1Q00780 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC12.96□□□□□ -0.33
Col8a1Q00780 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col8a1Q00780 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC12.96□□□□□ -0.33
Col8a1Q00780 0610010K14Rik-204ENSMUST00000102569 778 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col8a1Q00780 Gm25287-201ENSMUST00000103846 110 ntBASIC12.96□□□□□ -0.33
Col8a1Q00780 Gm22918-201ENSMUST00000103855 110 ntBASIC12.96□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 37.8 ms