Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Lig3P97386 Itgb1-201ENSMUST00000090006 3815 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Lig3P97386 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC16.63■□□□□ 0.25
Lig3P97386 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC16.63■□□□□ 0.25
Lig3P97386 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
Lig3P97386 Dlg1-201ENSMUST00000023454 3725 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Lig3P97386 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Lig3P97386 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Lig3P97386 Gm27321-201ENSMUST00000185021 205 ntBASIC16.63■□□□□ 0.25
Lig3P97386 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC16.63■□□□□ 0.25
Lig3P97386 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC16.63■□□□□ 0.25
Lig3P97386 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
Lig3P97386 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Lig3P97386 Camta1-202ENSMUST00000097774 8533 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Lig3P97386 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Lig3P97386 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
Lig3P97386 Gm44443-201ENSMUST00000204396 5633 ntBASIC16.63■□□□□ 0.25
Lig3P97386 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Lig3P97386 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC16.63■□□□□ 0.25
Lig3P97386 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Lig3P97386 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Lig3P97386 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Lig3P97386 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Lig3P97386 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Lig3P97386 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Lig3P97386 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lig3P97386 2010007H06Rik-202ENSMUST00000186025 4934 ntTSL 2 BASIC16.62■□□□□ 0.25
Lig3P97386 Zfp503-201ENSMUST00000043409 4216 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lig3P97386 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC16.62■□□□□ 0.25
Lig3P97386 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lig3P97386 Dnajc7-201ENSMUST00000014339 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lig3P97386 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Lig3P97386 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lig3P97386 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lig3P97386 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC16.62■□□□□ 0.25
Lig3P97386 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC16.62■□□□□ 0.25
Lig3P97386 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lig3P97386 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC16.62■□□□□ 0.25
Lig3P97386 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lig3P97386 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Lig3P97386 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC16.62■□□□□ 0.25
Lig3P97386 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC16.62■□□□□ 0.25
Lig3P97386 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC16.62■□□□□ 0.25
Lig3P97386 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lig3P97386 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Lig3P97386 Adcy1-201ENSMUST00000020706 12259 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
Lig3P97386 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Lig3P97386 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lig3P97386 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lig3P97386 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lig3P97386 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
Lig3P97386 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lig3P97386 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lig3P97386 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Lig3P97386 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lig3P97386 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lig3P97386 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lig3P97386 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC16.61■□□□□ 0.25
Lig3P97386 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lig3P97386 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lig3P97386 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lig3P97386 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Lig3P97386 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
Lig3P97386 Pak2-201ENSMUST00000023467 5741 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lig3P97386 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lig3P97386 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Lig3P97386 Psma6-204ENSMUST00000163070 787 ntTSL 5 BASIC16.61■□□□□ 0.25
Lig3P97386 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
Lig3P97386 Mir6956-201ENSMUST00000183598 62 ntBASIC16.61■□□□□ 0.25
Lig3P97386 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lig3P97386 Gm8396-201ENSMUST00000057361 823 ntBASIC16.61■□□□□ 0.25
Lig3P97386 Gm9949-201ENSMUST00000067743 962 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lig3P97386 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC16.61■□□□□ 0.25
Lig3P97386 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lig3P97386 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Lig3P97386 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lig3P97386 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Lig3P97386 Dgkq-201ENSMUST00000053913 4938 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lig3P97386 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC16.61■□□□□ 0.25
Lig3P97386 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Lig3P97386 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lig3P97386 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Lig3P97386 Cand2-201ENSMUST00000075995 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Lig3P97386 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Lig3P97386 Gm37305-201ENSMUST00000195714 4279 ntBASIC16.6■□□□□ 0.25
Lig3P97386 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Lig3P97386 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Lig3P97386 Efr3b-201ENSMUST00000111178 6547 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Lig3P97386 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Lig3P97386 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Lig3P97386 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Lig3P97386 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
Lig3P97386 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC16.6■□□□□ 0.25
Lig3P97386 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC16.6■□□□□ 0.25
Lig3P97386 Gm37171-201ENSMUST00000192636 1185 ntBASIC16.6■□□□□ 0.25
Lig3P97386 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Lig3P97386 Dad1-201ENSMUST00000022781 878 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Lig3P97386 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Lig3P97386 Hic2-201ENSMUST00000090190 6354 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Lig3P97386 Pitpnm2-209ENSMUST00000161938 5866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms