Protein–RNA interactions for Protein: P70354

Msx3, Homeobox protein MSX-3, mousemouse

Predictions only

Length 204 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx3P70354 Gm44367-201ENSMUST00000196836 138 ntBASIC15.68■□□□□ 0.1
Msx3P70354 Gm44350-201ENSMUST00000197197 138 ntBASIC15.68■□□□□ 0.1
Msx3P70354 Gm44390-201ENSMUST00000197533 144 ntBASIC15.68■□□□□ 0.1
Msx3P70354 Gm44313-201ENSMUST00000198018 138 ntBASIC15.68■□□□□ 0.1
Msx3P70354 Gm44486-201ENSMUST00000198508 138 ntBASIC15.68■□□□□ 0.1
Msx3P70354 Gm44314-201ENSMUST00000199263 138 ntBASIC15.68■□□□□ 0.1
Msx3P70354 Gm44394-201ENSMUST00000199558 138 ntBASIC15.68■□□□□ 0.1
Msx3P70354 Gm44484-201ENSMUST00000199873 138 ntBASIC15.68■□□□□ 0.1
Msx3P70354 Gm43347-201ENSMUST00000200226 580 ntBASIC15.68■□□□□ 0.1
Msx3P70354 Gm44466-201ENSMUST00000200264 138 ntBASIC15.68■□□□□ 0.1
Msx3P70354 Gm44359-201ENSMUST00000200671 138 ntBASIC15.68■□□□□ 0.1
Msx3P70354 CT009510.1-201ENSMUST00000227972 270 ntBASIC15.68■□□□□ 0.1
Msx3P70354 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Msx3P70354 Birc2-201ENSMUST00000054878 378 ntBASIC15.68■□□□□ 0.1
Msx3P70354 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Msx3P70354 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Msx3P70354 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Msx3P70354 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Msx3P70354 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Msx3P70354 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Msx3P70354 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Msx3P70354 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Msx3P70354 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Msx3P70354 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Msx3P70354 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC15.67■□□□□ 0.1
Msx3P70354 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Msx3P70354 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Msx3P70354 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Msx3P70354 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Msx3P70354 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Msx3P70354 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Msx3P70354 Camsap1-202ENSMUST00000114167 7981 ntAPPRIS P2 TSL 5 BASIC15.67■□□□□ 0.1
Msx3P70354 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Msx3P70354 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Msx3P70354 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC15.67■□□□□ 0.1
Msx3P70354 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Msx3P70354 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Msx3P70354 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Msx3P70354 Gm11453-201ENSMUST00000117318 1007 ntBASIC15.67■□□□□ 0.1
Msx3P70354 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC15.67■□□□□ 0.1
Msx3P70354 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Msx3P70354 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Msx3P70354 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Msx3P70354 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Msx3P70354 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Msx3P70354 Ralgapa2-211ENSMUST00000228797 8245 ntAPPRIS ALT2 BASIC15.67■□□□□ 0.1
Msx3P70354 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Msx3P70354 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
Msx3P70354 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Msx3P70354 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Msx3P70354 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Msx3P70354 Gm8242-201ENSMUST00000193029 1420 ntBASIC15.67■□□□□ 0.1
Msx3P70354 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Msx3P70354 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Msx3P70354 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
Msx3P70354 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Msx3P70354 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Msx3P70354 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC15.66■□□□□ 0.1
Msx3P70354 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Msx3P70354 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Msx3P70354 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Msx3P70354 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Msx3P70354 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Msx3P70354 Sez6-202ENSMUST00000093995 4239 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Msx3P70354 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC15.66■□□□□ 0.1
Msx3P70354 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC15.66■□□□□ 0.1
Msx3P70354 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Msx3P70354 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Msx3P70354 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Msx3P70354 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC15.66■□□□□ 0.1
Msx3P70354 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Msx3P70354 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Msx3P70354 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Msx3P70354 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC15.66■□□□□ 0.1
Msx3P70354 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Msx3P70354 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC15.66■□□□□ 0.1
Msx3P70354 Gm18489-201ENSMUST00000172565 551 ntBASIC15.66■□□□□ 0.1
Msx3P70354 Gm27459-201ENSMUST00000184860 107 ntBASIC15.66■□□□□ 0.1
Msx3P70354 Gm34391-201ENSMUST00000203706 907 ntBASIC15.66■□□□□ 0.1
Msx3P70354 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Msx3P70354 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Msx3P70354 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Msx3P70354 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Msx3P70354 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Msx3P70354 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Msx3P70354 Synj2-210ENSMUST00000115791 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Msx3P70354 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Msx3P70354 Gm3928-201ENSMUST00000121141 1307 ntBASIC15.66■□□□□ 0.1
Msx3P70354 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Msx3P70354 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Msx3P70354 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Msx3P70354 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC15.65■□□□□ 0.1
Msx3P70354 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Msx3P70354 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Msx3P70354 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC15.65■□□□□ 0.1
Msx3P70354 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Msx3P70354 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Msx3P70354 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Msx3P70354 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Msx3P70354 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 33.1 ms