Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Hmgb1P63158 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Hmgb1P63158 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Hmgb1P63158 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Hmgb1P63158 E330009J07Rik-202ENSMUST00000101492 6742 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Hmgb1P63158 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Hmgb1P63158 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
Hmgb1P63158 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Hmgb1P63158 Abr-203ENSMUST00000094012 5236 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Hmgb1P63158 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Hmgb1P63158 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Hmgb1P63158 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Hmgb1P63158 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC16.78■□□□□ 0.28
Hmgb1P63158 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC16.78■□□□□ 0.28
Hmgb1P63158 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Hmgb1P63158 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Hmgb1P63158 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Hmgb1P63158 Gm17807-201ENSMUST00000186869 298 ntBASIC16.78■□□□□ 0.28
Hmgb1P63158 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC16.78■□□□□ 0.28
Hmgb1P63158 Cmtm5-203ENSMUST00000227441 610 ntBASIC16.78■□□□□ 0.28
Hmgb1P63158 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Hmgb1P63158 Ccdc182-201ENSMUST00000037268 1204 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Hmgb1P63158 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Hmgb1P63158 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
Hmgb1P63158 Grk6-207ENSMUST00000225925 2769 ntBASIC16.78■□□□□ 0.28
Hmgb1P63158 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Hmgb1P63158 Rsbn1-202ENSMUST00000068879 6712 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Hmgb1P63158 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Hmgb1P63158 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Hmgb1P63158 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Hmgb1P63158 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
Hmgb1P63158 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Hmgb1P63158 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Hmgb1P63158 Ahctf1-201ENSMUST00000027768 8506 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Hmgb1P63158 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.28
Hmgb1P63158 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC16.77■□□□□ 0.28
Hmgb1P63158 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Hmgb1P63158 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Hmgb1P63158 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.28
Hmgb1P63158 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
Hmgb1P63158 Dlg5-202ENSMUST00000073687 7784 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Hmgb1P63158 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Hmgb1P63158 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Hmgb1P63158 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Hmgb1P63158 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
Hmgb1P63158 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC16.77■□□□□ 0.28
Hmgb1P63158 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC16.77■□□□□ 0.28
Hmgb1P63158 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Hmgb1P63158 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Hmgb1P63158 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Hmgb1P63158 Rbfox2-207ENSMUST00000227533 1041 ntBASIC16.77■□□□□ 0.28
Hmgb1P63158 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Hmgb1P63158 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Hmgb1P63158 Cgn-202ENSMUST00000107273 5016 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
Hmgb1P63158 Atl1-201ENSMUST00000021466 5150 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Hmgb1P63158 Synj2-210ENSMUST00000115791 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
Hmgb1P63158 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC16.76■□□□□ 0.27
Hmgb1P63158 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Hmgb1P63158 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Hmgb1P63158 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Hmgb1P63158 Hectd2-201ENSMUST00000047247 4731 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
Hmgb1P63158 Lrp4-201ENSMUST00000028689 7926 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Hmgb1P63158 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Hmgb1P63158 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Hmgb1P63158 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
Hmgb1P63158 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Hmgb1P63158 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC16.76■□□□□ 0.27
Hmgb1P63158 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
Hmgb1P63158 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
Hmgb1P63158 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Hmgb1P63158 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Hmgb1P63158 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
Hmgb1P63158 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Hmgb1P63158 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Hmgb1P63158 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Hmgb1P63158 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Hmgb1P63158 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Hmgb1P63158 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Hmgb1P63158 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Hmgb1P63158 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Hmgb1P63158 Gm5357-201ENSMUST00000212720 1924 ntBASIC16.76■□□□□ 0.27
Hmgb1P63158 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Hmgb1P63158 Npr3-201ENSMUST00000066529 6892 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Hmgb1P63158 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC16.75■□□□□ 0.27
Hmgb1P63158 Hist1h2be-202ENSMUST00000091704 2480 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Hmgb1P63158 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Hmgb1P63158 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Hmgb1P63158 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Hmgb1P63158 Per3-201ENSMUST00000103204 5999 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Hmgb1P63158 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Hmgb1P63158 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
Hmgb1P63158 Gm8318-201ENSMUST00000182954 872 ntBASIC16.75■□□□□ 0.27
Hmgb1P63158 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC16.75■□□□□ 0.27
Hmgb1P63158 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC16.75■□□□□ 0.27
Hmgb1P63158 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
Hmgb1P63158 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Hmgb1P63158 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Hmgb1P63158 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Hmgb1P63158 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Hmgb1P63158 Lpgat1-201ENSMUST00000110855 7233 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 24.1 ms