Protein–RNA interactions for Protein: P54276

Msh6, DNA mismatch repair protein Msh6, mousemouse

Known RBP Predictions only

Length 1,358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh6P54276 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Msh6P54276 Gm5049-201ENSMUST00000195878 1590 ntBASIC19.22■□□□□ 0.67
Msh6P54276 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Msh6P54276 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC19.22■□□□□ 0.67
Msh6P54276 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Msh6P54276 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Msh6P54276 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC19.21■□□□□ 0.67
Msh6P54276 Gm15199-201ENSMUST00000129933 542 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Msh6P54276 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Msh6P54276 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Msh6P54276 Gnb4-208ENSMUST00000193050 423 ntTSL 5 BASIC19.21■□□□□ 0.67
Msh6P54276 Rpl32-202ENSMUST00000203816 906 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
Msh6P54276 Tex12-202ENSMUST00000217236 1003 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Msh6P54276 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Msh6P54276 Gm10322-201ENSMUST00000095646 336 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Msh6P54276 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Msh6P54276 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC19.21■□□□□ 0.67
Msh6P54276 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Msh6P54276 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Msh6P54276 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Msh6P54276 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Msh6P54276 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC19.21■□□□□ 0.67
Msh6P54276 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Msh6P54276 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Msh6P54276 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Msh6P54276 Stra8-203ENSMUST00000114999 1455 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Msh6P54276 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Msh6P54276 Celf4-206ENSMUST00000224553 1729 ntBASIC19.2■□□□□ 0.66
Msh6P54276 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Msh6P54276 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Msh6P54276 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC19.2■□□□□ 0.66
Msh6P54276 Pfdn6-204ENSMUST00000174048 560 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
Msh6P54276 Mir7684-201ENSMUST00000183858 60 ntBASIC19.2■□□□□ 0.66
Msh6P54276 Mir8102-201ENSMUST00000184148 139 ntBASIC19.2■□□□□ 0.66
Msh6P54276 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Msh6P54276 Gm2423-201ENSMUST00000074863 733 ntBASIC19.2■□□□□ 0.66
Msh6P54276 2900055J20Rik-201ENSMUST00000096572 723 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Msh6P54276 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Msh6P54276 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
Msh6P54276 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Msh6P54276 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Msh6P54276 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Msh6P54276 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Msh6P54276 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Msh6P54276 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Msh6P54276 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Msh6P54276 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Msh6P54276 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Msh6P54276 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Msh6P54276 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC19.2■□□□□ 0.66
Msh6P54276 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Msh6P54276 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Msh6P54276 Gm16011-201ENSMUST00000121567 2662 ntBASIC19.19■□□□□ 0.66
Msh6P54276 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
Msh6P54276 Gm29541-201ENSMUST00000191351 678 ntBASIC19.19■□□□□ 0.66
Msh6P54276 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Msh6P54276 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Msh6P54276 Reep6-201ENSMUST00000040081 850 ntTSL 5 BASIC19.19■□□□□ 0.66
Msh6P54276 Med8-203ENSMUST00000084319 1134 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Msh6P54276 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Msh6P54276 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Msh6P54276 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Msh6P54276 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Msh6P54276 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Msh6P54276 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC19.19■□□□□ 0.66
Msh6P54276 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Msh6P54276 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Msh6P54276 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC19.19■□□□□ 0.66
Msh6P54276 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC19.19■□□□□ 0.66
Msh6P54276 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Msh6P54276 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Msh6P54276 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC19.19■□□□□ 0.66
Msh6P54276 Gm13453-201ENSMUST00000118708 357 ntBASIC19.19■□□□□ 0.66
Msh6P54276 Gm9824-201ENSMUST00000178707 561 ntBASIC19.19■□□□□ 0.66
Msh6P54276 S100a13-201ENSMUST00000048138 715 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Msh6P54276 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Msh6P54276 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Msh6P54276 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Msh6P54276 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Msh6P54276 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC19.18■□□□□ 0.66
Msh6P54276 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Msh6P54276 Rcn3-208ENSMUST00000211352 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Msh6P54276 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Msh6P54276 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Msh6P54276 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Msh6P54276 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Msh6P54276 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Msh6P54276 Rbfox2-209ENSMUST00000228087 1694 ntAPPRIS ALT2 BASIC19.18■□□□□ 0.66
Msh6P54276 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Msh6P54276 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Msh6P54276 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC19.18■□□□□ 0.66
Msh6P54276 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC19.18■□□□□ 0.66
Msh6P54276 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC19.18■□□□□ 0.66
Msh6P54276 Gldnos-201ENSMUST00000149237 841 ntTSL 2 BASIC19.18■□□□□ 0.66
Msh6P54276 Gm16026-204ENSMUST00000162652 683 ntBASIC19.18■□□□□ 0.66
Msh6P54276 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Msh6P54276 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC19.18■□□□□ 0.66
Msh6P54276 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Msh6P54276 Pltp-201ENSMUST00000059954 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Msh6P54276 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 23.9 ms