Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Sox1P53783 Nfe2-207ENSMUST00000134554 1761 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
Sox1P53783 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Sox1P53783 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Sox1P53783 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC15.51■□□□□ 0.07
Sox1P53783 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Sox1P53783 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Sox1P53783 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Sox1P53783 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Sox1P53783 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Sox1P53783 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
Sox1P53783 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC15.5■□□□□ 0.07
Sox1P53783 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Sox1P53783 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Sox1P53783 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
Sox1P53783 Gng7-205ENSMUST00000118465 875 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Sox1P53783 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
Sox1P53783 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Sox1P53783 Gm10499-201ENSMUST00000174094 934 ntBASIC15.5■□□□□ 0.07
Sox1P53783 Gm27920-201ENSMUST00000183953 96 ntBASIC15.5■□□□□ 0.07
Sox1P53783 1700094J05Rik-202ENSMUST00000190491 997 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Sox1P53783 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Sox1P53783 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Sox1P53783 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Sox1P53783 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Sox1P53783 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC15.5■□□□□ 0.07
Sox1P53783 Dixdc1-202ENSMUST00000117093 1613 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Sox1P53783 Gm19439-201ENSMUST00000198195 2273 ntBASIC15.5■□□□□ 0.07
Sox1P53783 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
Sox1P53783 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Sox1P53783 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Sox1P53783 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Sox1P53783 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC15.49■□□□□ 0.07
Sox1P53783 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Sox1P53783 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
Sox1P53783 Med4-201ENSMUST00000022705 1328 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Sox1P53783 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC15.49■□□□□ 0.07
Sox1P53783 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Sox1P53783 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
Sox1P53783 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Sox1P53783 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC15.49■□□□□ 0.07
Sox1P53783 Gm7286-201ENSMUST00000182691 1007 ntBASIC15.49■□□□□ 0.07
Sox1P53783 Mir6392-201ENSMUST00000184924 108 ntBASIC15.49■□□□□ 0.07
Sox1P53783 1700029B24Rik-201ENSMUST00000194040 497 ntBASIC15.49■□□□□ 0.07
Sox1P53783 Gm10766-202ENSMUST00000194123 606 ntBASIC15.49■□□□□ 0.07
Sox1P53783 AC162801.1-201ENSMUST00000220612 198 ntBASIC15.49■□□□□ 0.07
Sox1P53783 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Sox1P53783 Gm10478-201ENSMUST00000084451 396 ntBASIC15.49■□□□□ 0.07
Sox1P53783 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Sox1P53783 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Sox1P53783 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Sox1P53783 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Sox1P53783 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC15.49■□□□□ 0.07
Sox1P53783 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
Sox1P53783 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
Sox1P53783 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Sox1P53783 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Sox1P53783 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Sox1P53783 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Sox1P53783 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Sox1P53783 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Sox1P53783 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC15.49■□□□□ 0.07
Sox1P53783 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Sox1P53783 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Sox1P53783 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Sox1P53783 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Sox1P53783 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Sox1P53783 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Sox1P53783 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Sox1P53783 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Sox1P53783 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Sox1P53783 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
Sox1P53783 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Sox1P53783 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC15.48■□□□□ 0.07
Sox1P53783 Cryzl1-204ENSMUST00000122254 845 ntTSL 3 BASIC15.48■□□□□ 0.07
Sox1P53783 Vhl-ps1-201ENSMUST00000174813 597 ntBASIC15.48■□□□□ 0.07
Sox1P53783 2310040G24Rik-202ENSMUST00000189386 775 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Sox1P53783 Gm28511-201ENSMUST00000191594 450 ntTSL 3 BASIC15.48■□□□□ 0.07
Sox1P53783 Ip6k2-210ENSMUST00000194875 748 ntTSL 2 BASIC15.48■□□□□ 0.07
Sox1P53783 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Sox1P53783 Gm3786-201ENSMUST00000202659 378 ntBASIC15.48■□□□□ 0.07
Sox1P53783 Hddc3-208ENSMUST00000206122 696 ntTSL 3 BASIC15.48■□□□□ 0.07
Sox1P53783 Gm44974-201ENSMUST00000206387 1279 ntBASIC15.48■□□□□ 0.07
Sox1P53783 AC158529.1-201ENSMUST00000223618 239 ntBASIC15.48■□□□□ 0.07
Sox1P53783 1700120B22Rik-201ENSMUST00000054837 464 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Sox1P53783 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Sox1P53783 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Sox1P53783 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
Sox1P53783 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Sox1P53783 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Sox1P53783 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC15.48■□□□□ 0.07
Sox1P53783 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC15.48■□□□□ 0.07
Sox1P53783 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Sox1P53783 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Sox1P53783 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Sox1P53783 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Sox1P53783 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
Sox1P53783 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Sox1P53783 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Sox1P53783 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 20.7 ms