Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Shmt1P50431 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Shmt1P50431 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
Shmt1P50431 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC16.1■□□□□ 0.17
Shmt1P50431 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Shmt1P50431 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Shmt1P50431 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Shmt1P50431 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Shmt1P50431 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC16.1■□□□□ 0.17
Shmt1P50431 BC037039-201ENSMUST00000192003 2205 ntBASIC16.1■□□□□ 0.17
Shmt1P50431 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Shmt1P50431 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Shmt1P50431 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Shmt1P50431 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Shmt1P50431 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Shmt1P50431 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC16.09■□□□□ 0.17
Shmt1P50431 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Shmt1P50431 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Shmt1P50431 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Shmt1P50431 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Shmt1P50431 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Shmt1P50431 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Shmt1P50431 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Shmt1P50431 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Shmt1P50431 Fam241b-208ENSMUST00000142796 1135 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Shmt1P50431 Gm29456-201ENSMUST00000189894 768 ntTSL 3 BASIC16.09■□□□□ 0.17
Shmt1P50431 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Shmt1P50431 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Shmt1P50431 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Shmt1P50431 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Shmt1P50431 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Shmt1P50431 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Shmt1P50431 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Shmt1P50431 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Shmt1P50431 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Shmt1P50431 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC16.09■□□□□ 0.17
Shmt1P50431 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
Shmt1P50431 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Shmt1P50431 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Shmt1P50431 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Shmt1P50431 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
Shmt1P50431 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
Shmt1P50431 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Shmt1P50431 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Shmt1P50431 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Shmt1P50431 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Shmt1P50431 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
Shmt1P50431 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Shmt1P50431 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
Shmt1P50431 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC16.08■□□□□ 0.16
Shmt1P50431 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC16.08■□□□□ 0.16
Shmt1P50431 AC154572.2-201ENSMUST00000225105 997 ntBASIC16.08■□□□□ 0.16
Shmt1P50431 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Shmt1P50431 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Shmt1P50431 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Shmt1P50431 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Shmt1P50431 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Shmt1P50431 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Shmt1P50431 Acin1-224ENSMUST00000167015 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Shmt1P50431 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Shmt1P50431 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Shmt1P50431 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Shmt1P50431 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Shmt1P50431 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC16.07■□□□□ 0.16
Shmt1P50431 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Shmt1P50431 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Shmt1P50431 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
Shmt1P50431 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Shmt1P50431 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC16.07■□□□□ 0.16
Shmt1P50431 Rps19-201ENSMUST00000108428 1284 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Shmt1P50431 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC16.07■□□□□ 0.16
Shmt1P50431 Gm12892-201ENSMUST00000117367 1146 ntBASIC16.07■□□□□ 0.16
Shmt1P50431 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC16.07■□□□□ 0.16
Shmt1P50431 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Shmt1P50431 Mir7036b-201ENSMUST00000184791 63 ntBASIC16.07■□□□□ 0.16
Shmt1P50431 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Shmt1P50431 Tspo-201ENSMUST00000047419 837 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Shmt1P50431 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
Shmt1P50431 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Shmt1P50431 Gjb1-202ENSMUST00000119080 1513 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
Shmt1P50431 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC16.07■□□□□ 0.16
Shmt1P50431 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Shmt1P50431 Tpm1-214ENSMUST00000113701 1677 ntTSL 5 BASIC16.07■□□□□ 0.16
Shmt1P50431 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Shmt1P50431 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Shmt1P50431 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Shmt1P50431 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Shmt1P50431 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
Shmt1P50431 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC16.07■□□□□ 0.16
Shmt1P50431 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Shmt1P50431 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
Shmt1P50431 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Shmt1P50431 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Shmt1P50431 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Shmt1P50431 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Shmt1P50431 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Shmt1P50431 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Shmt1P50431 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Shmt1P50431 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Shmt1P50431 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 23.5 ms