Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Cdx2P43241 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Cdx2P43241 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Cdx2P43241 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Cdx2P43241 Ntrk2-205ENSMUST00000224402 2284 ntBASIC14.42□□□□□ -0.1
Cdx2P43241 Hist3h2bb-ps-201ENSMUST00000117558 465 ntBASIC14.42□□□□□ -0.1
Cdx2P43241 Gm13383-201ENSMUST00000131190 1171 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Cdx2P43241 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Cdx2P43241 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Cdx2P43241 Gm8116-201ENSMUST00000182917 1201 ntBASIC14.42□□□□□ -0.1
Cdx2P43241 Gm27920-201ENSMUST00000183953 96 ntBASIC14.42□□□□□ -0.1
Cdx2P43241 Tex12-202ENSMUST00000217236 1003 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Cdx2P43241 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Cdx2P43241 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Cdx2P43241 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Cdx2P43241 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Cdx2P43241 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Cdx2P43241 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Cdx2P43241 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Cdx2P43241 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Cdx2P43241 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Cdx2P43241 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
Cdx2P43241 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Cdx2P43241 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdx2P43241 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Cdx2P43241 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Cdx2P43241 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdx2P43241 Zfyve19-202ENSMUST00000102519 1505 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Cdx2P43241 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC14.41□□□□□ -0.1
Cdx2P43241 Lat2-201ENSMUST00000036362 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdx2P43241 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdx2P43241 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdx2P43241 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdx2P43241 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdx2P43241 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Cdx2P43241 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdx2P43241 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdx2P43241 Gm13823-201ENSMUST00000119930 345 ntBASIC14.41□□□□□ -0.1
Cdx2P43241 4930417O22Rik-201ENSMUST00000123249 1184 ntTSL 2 BASIC14.41□□□□□ -0.1
Cdx2P43241 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Cdx2P43241 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC14.41□□□□□ -0.1
Cdx2P43241 Gm20650-201ENSMUST00000175690 198 ntTSL 3 BASIC14.41□□□□□ -0.1
Cdx2P43241 Gm8597-201ENSMUST00000191525 1109 ntBASIC14.41□□□□□ -0.1
Cdx2P43241 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdx2P43241 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdx2P43241 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
Cdx2P43241 2900055J20Rik-201ENSMUST00000096572 723 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
Cdx2P43241 Cldn14-204ENSMUST00000169391 1456 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
Cdx2P43241 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC14.41□□□□□ -0.1
Cdx2P43241 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdx2P43241 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdx2P43241 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdx2P43241 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Cdx2P43241 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdx2P43241 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Cdx2P43241 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdx2P43241 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdx2P43241 Gm13233-201ENSMUST00000118760 1443 ntBASIC14.41□□□□□ -0.1
Cdx2P43241 Gm13244-201ENSMUST00000118855 1446 ntBASIC14.41□□□□□ -0.1
Cdx2P43241 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Cdx2P43241 AC124751.1-201ENSMUST00000222716 1408 ntBASIC14.41□□□□□ -0.1
Cdx2P43241 1700113H08Rik-201ENSMUST00000169849 1332 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Cdx2P43241 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdx2P43241 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdx2P43241 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdx2P43241 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Cdx2P43241 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdx2P43241 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdx2P43241 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdx2P43241 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdx2P43241 Anapc15-204ENSMUST00000106973 650 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
Cdx2P43241 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Cdx2P43241 Gm12264-201ENSMUST00000123949 500 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Cdx2P43241 Gm25144-201ENSMUST00000179561 110 ntBASIC14.4□□□□□ -0.1
Cdx2P43241 Gm25352-201ENSMUST00000179815 110 ntBASIC14.4□□□□□ -0.1
Cdx2P43241 Gnb4-208ENSMUST00000193050 423 ntTSL 5 BASIC14.4□□□□□ -0.1
Cdx2P43241 Gm43438-201ENSMUST00000198133 379 ntBASIC14.4□□□□□ -0.1
Cdx2P43241 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdx2P43241 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdx2P43241 CT009510.1-201ENSMUST00000227972 270 ntBASIC14.4□□□□□ -0.1
Cdx2P43241 Aif1-201ENSMUST00000025257 847 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
Cdx2P43241 Lamtor1-201ENSMUST00000033131 1119 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdx2P43241 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdx2P43241 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdx2P43241 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdx2P43241 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdx2P43241 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Cdx2P43241 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdx2P43241 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC14.4□□□□□ -0.1
Cdx2P43241 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdx2P43241 Gbgt1-203ENSMUST00000163121 1335 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Cdx2P43241 H1fnt-201ENSMUST00000060855 1326 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
Cdx2P43241 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Cdx2P43241 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Cdx2P43241 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Cdx2P43241 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Cdx2P43241 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC14.39□□□□□ -0.11
Cdx2P43241 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Cdx2P43241 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Cdx2P43241 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 40.4 ms