Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdx1P18111 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdx1P18111 Fstl5-201ENSMUST00000038364 5107 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdx1P18111 Adamts2-201ENSMUST00000040523 7266 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdx1P18111 Crybg1-201ENSMUST00000020017 6608 ntAPPRIS P2 TSL 5 BASIC12.35□□□□□ -0.43
Cdx1P18111 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdx1P18111 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdx1P18111 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdx1P18111 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdx1P18111 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Cdx1P18111 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdx1P18111 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
Cdx1P18111 Itgb3-201ENSMUST00000021028 5784 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdx1P18111 Cadps2-213ENSMUST00000166458 4598 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
Cdx1P18111 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdx1P18111 Dip2b-202ENSMUST00000100203 8914 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Cdx1P18111 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Cdx1P18111 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC12.35□□□□□ -0.43
Cdx1P18111 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdx1P18111 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdx1P18111 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdx1P18111 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Cdx1P18111 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdx1P18111 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC12.34□□□□□ -0.43
Cdx1P18111 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC12.34□□□□□ -0.43
Cdx1P18111 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdx1P18111 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdx1P18111 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdx1P18111 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC12.34□□□□□ -0.43
Cdx1P18111 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC12.34□□□□□ -0.43
Cdx1P18111 Gm26039-201ENSMUST00000158152 144 ntBASIC12.34□□□□□ -0.43
Cdx1P18111 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC12.34□□□□□ -0.43
Cdx1P18111 Gm17807-201ENSMUST00000186869 298 ntBASIC12.34□□□□□ -0.43
Cdx1P18111 Gm17808-201ENSMUST00000200859 894 ntBASIC12.34□□□□□ -0.43
Cdx1P18111 AC130713.1-201ENSMUST00000228853 1096 ntBASIC12.34□□□□□ -0.43
Cdx1P18111 Rnpepl1-201ENSMUST00000027487 3337 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdx1P18111 Adamts7-201ENSMUST00000113059 5379 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Cdx1P18111 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdx1P18111 AL590614.2-201ENSMUST00000225374 1937 ntBASIC12.34□□□□□ -0.43
Cdx1P18111 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Cdx1P18111 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Cdx1P18111 Fut7-202ENSMUST00000100320 2076 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdx1P18111 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdx1P18111 Dok7-201ENSMUST00000050709 2498 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Cdx1P18111 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Cdx1P18111 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdx1P18111 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdx1P18111 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdx1P18111 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdx1P18111 Axdnd1-204ENSMUST00000178036 3586 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Cdx1P18111 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
Cdx1P18111 Gm38197-201ENSMUST00000192320 2122 ntBASIC12.34□□□□□ -0.43
Cdx1P18111 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Cdx1P18111 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
Cdx1P18111 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
Cdx1P18111 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Cdx1P18111 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdx1P18111 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Cdx1P18111 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC12.33□□□□□ -0.44
Cdx1P18111 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC12.33□□□□□ -0.44
Cdx1P18111 Mypopos-202ENSMUST00000205975 2321 ntBASIC12.33□□□□□ -0.44
Cdx1P18111 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdx1P18111 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdx1P18111 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdx1P18111 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdx1P18111 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC12.33□□□□□ -0.44
Cdx1P18111 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
Cdx1P18111 Clstn1-202ENSMUST00000105691 4459 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdx1P18111 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC12.33□□□□□ -0.44
Cdx1P18111 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdx1P18111 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
Cdx1P18111 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdx1P18111 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdx1P18111 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC12.33□□□□□ -0.44
Cdx1P18111 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
Cdx1P18111 Gm17971-201ENSMUST00000190239 806 ntBASIC12.33□□□□□ -0.44
Cdx1P18111 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Cdx1P18111 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC12.33□□□□□ -0.44
Cdx1P18111 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
Cdx1P18111 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC12.33□□□□□ -0.44
Cdx1P18111 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC12.33□□□□□ -0.44
Cdx1P18111 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdx1P18111 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdx1P18111 Klhdc3-201ENSMUST00000071841 2123 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdx1P18111 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdx1P18111 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdx1P18111 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdx1P18111 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdx1P18111 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdx1P18111 Capn7-201ENSMUST00000022451 3648 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdx1P18111 Dgke-201ENSMUST00000000285 5208 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdx1P18111 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdx1P18111 Nxpe3-201ENSMUST00000099705 6430 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdx1P18111 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdx1P18111 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
Cdx1P18111 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Cdx1P18111 Pcdhga8-201ENSMUST00000066149 4730 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Cdx1P18111 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Cdx1P18111 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC12.33□□□□□ -0.44
Cdx1P18111 Alg10b-201ENSMUST00000100309 3727 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 71.3 ms