Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Lire1P11260 AC153366.2-201ENSMUST00000219461 1984 ntBASIC14.45□□□□□ -0.1
Lire1P11260 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC14.45□□□□□ -0.1
Lire1P11260 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Lire1P11260 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Lire1P11260 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Lire1P11260 Ntrk2-208ENSMUST00000225583 2719 ntBASIC14.45□□□□□ -0.1
Lire1P11260 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
Lire1P11260 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC14.45□□□□□ -0.1
Lire1P11260 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC14.45□□□□□ -0.1
Lire1P11260 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Lire1P11260 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Lire1P11260 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Lire1P11260 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC14.45□□□□□ -0.1
Lire1P11260 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Lire1P11260 Gm25927-201ENSMUST00000175058 117 ntBASIC14.45□□□□□ -0.1
Lire1P11260 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Lire1P11260 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Lire1P11260 Gm43073-201ENSMUST00000198200 1189 ntBASIC14.45□□□□□ -0.1
Lire1P11260 AC161829.1-201ENSMUST00000220298 281 ntBASIC14.45□□□□□ -0.1
Lire1P11260 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Lire1P11260 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Lire1P11260 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Lire1P11260 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Lire1P11260 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Lire1P11260 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Lire1P11260 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Lire1P11260 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Lire1P11260 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Lire1P11260 Tpbg-202ENSMUST00000098500 3481 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Lire1P11260 Cant1-201ENSMUST00000017620 4182 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Lire1P11260 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Lire1P11260 Tlr2-201ENSMUST00000029623 3014 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Lire1P11260 Armcx1-203ENSMUST00000113197 2179 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Lire1P11260 Gm16029-201ENSMUST00000161643 2427 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Lire1P11260 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC14.44□□□□□ -0.1
Lire1P11260 Mip-201ENSMUST00000026455 2144 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Lire1P11260 Plod2-201ENSMUST00000070522 3649 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Lire1P11260 Tomm6os-201ENSMUST00000155812 2944 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Lire1P11260 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Lire1P11260 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Lire1P11260 Gm7935-201ENSMUST00000100555 1278 ntBASIC14.44□□□□□ -0.1
Lire1P11260 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC14.44□□□□□ -0.1
Lire1P11260 Gm5712-201ENSMUST00000199748 1043 ntBASIC14.44□□□□□ -0.1
Lire1P11260 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Lire1P11260 Gm18206-201ENSMUST00000207027 926 ntBASIC14.44□□□□□ -0.1
Lire1P11260 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Lire1P11260 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Lire1P11260 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Lire1P11260 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Lire1P11260 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC14.44□□□□□ -0.1
Lire1P11260 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC14.44□□□□□ -0.1
Lire1P11260 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Lire1P11260 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Lire1P11260 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Lire1P11260 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Lire1P11260 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Lire1P11260 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC14.43□□□□□ -0.1
Lire1P11260 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
Lire1P11260 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC14.43□□□□□ -0.1
Lire1P11260 Zfp264-201ENSMUST00000208656 1563 ntBASIC14.43□□□□□ -0.1
Lire1P11260 Gm43321-201ENSMUST00000198897 2409 ntBASIC14.43□□□□□ -0.1
Lire1P11260 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC14.43□□□□□ -0.1
Lire1P11260 Tmpo-202ENSMUST00000072239 3533 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Lire1P11260 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Lire1P11260 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Lire1P11260 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Lire1P11260 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC14.43□□□□□ -0.1
Lire1P11260 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC14.43□□□□□ -0.1
Lire1P11260 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Lire1P11260 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC14.43□□□□□ -0.1
Lire1P11260 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC14.43□□□□□ -0.1
Lire1P11260 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Lire1P11260 Gm37935-201ENSMUST00000192012 982 ntBASIC14.43□□□□□ -0.1
Lire1P11260 Gm13830-205ENSMUST00000201195 1155 ntBASIC14.43□□□□□ -0.1
Lire1P11260 Kcnc4-201ENSMUST00000009617 3667 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Lire1P11260 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Lire1P11260 A230077H06Rik-201ENSMUST00000188579 2918 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Lire1P11260 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Lire1P11260 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Lire1P11260 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Lire1P11260 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
Lire1P11260 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Lire1P11260 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Lire1P11260 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Lire1P11260 Adam15-201ENSMUST00000029676 2975 ntAPPRIS P4 TSL 1 (best) BASIC14.43□□□□□ -0.1
Lire1P11260 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Lire1P11260 Satb2-201ENSMUST00000042857 6277 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Lire1P11260 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Lire1P11260 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Lire1P11260 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Lire1P11260 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC14.42□□□□□ -0.1
Lire1P11260 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Lire1P11260 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Lire1P11260 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Lire1P11260 Lin54-201ENSMUST00000046154 4451 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Lire1P11260 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Lire1P11260 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Lire1P11260 Mocs1-201ENSMUST00000024797 2646 ntTSL 5 BASIC14.42□□□□□ -0.1
Lire1P11260 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 102.1 ms