Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col1a1P11087 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col1a1P11087 Rpl39-201ENSMUST00000115231 612 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col1a1P11087 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
Col1a1P11087 Kif16bos-201ENSMUST00000124774 495 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Col1a1P11087 Gm29542-201ENSMUST00000186876 704 ntTSL 3 BASIC17.68■□□□□ 0.42
Col1a1P11087 Gm6745-201ENSMUST00000199216 526 ntBASIC17.68■□□□□ 0.42
Col1a1P11087 Gm6180-201ENSMUST00000065243 498 ntBASIC17.68■□□□□ 0.42
Col1a1P11087 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC17.68■□□□□ 0.42
Col1a1P11087 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC17.68■□□□□ 0.42
Col1a1P11087 AC153526.5-201ENSMUST00000218661 2147 ntBASIC17.68■□□□□ 0.42
Col1a1P11087 Pde7b-206ENSMUST00000170265 1380 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Col1a1P11087 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col1a1P11087 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col1a1P11087 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
Col1a1P11087 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col1a1P11087 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col1a1P11087 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Col1a1P11087 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col1a1P11087 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col1a1P11087 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col1a1P11087 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Col1a1P11087 Gm19430-201ENSMUST00000193847 2137 ntBASIC17.67■□□□□ 0.42
Col1a1P11087 Etfrf1-206ENSMUST00000111725 872 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
Col1a1P11087 Akirin1-ps-201ENSMUST00000119676 458 ntBASIC17.67■□□□□ 0.42
Col1a1P11087 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Col1a1P11087 Mpv17-203ENSMUST00000200833 1171 ntTSL 5 BASIC17.67■□□□□ 0.42
Col1a1P11087 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col1a1P11087 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col1a1P11087 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col1a1P11087 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Col1a1P11087 Gm15222-202ENSMUST00000228667 1726 ntBASIC17.67■□□□□ 0.42
Col1a1P11087 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Col1a1P11087 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col1a1P11087 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col1a1P11087 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col1a1P11087 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col1a1P11087 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col1a1P11087 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col1a1P11087 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col1a1P11087 Dyx1c1-202ENSMUST00000098567 1612 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Col1a1P11087 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col1a1P11087 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Col1a1P11087 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col1a1P11087 1700037H04Rik-202ENSMUST00000103188 1241 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col1a1P11087 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Col1a1P11087 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC17.66■□□□□ 0.42
Col1a1P11087 Gm6912-201ENSMUST00000117218 544 ntBASIC17.66■□□□□ 0.42
Col1a1P11087 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
Col1a1P11087 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC17.66■□□□□ 0.42
Col1a1P11087 Gm15701-201ENSMUST00000129559 573 ntTSL 3 BASIC17.66■□□□□ 0.42
Col1a1P11087 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Col1a1P11087 1700029H14Rik-204ENSMUST00000151400 1216 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Col1a1P11087 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Col1a1P11087 Fbxw4-204ENSMUST00000160018 931 ntTSL 3 BASIC17.66■□□□□ 0.42
Col1a1P11087 Gm5479-201ENSMUST00000160578 435 ntBASIC17.66■□□□□ 0.42
Col1a1P11087 A330069E16Rik-201ENSMUST00000181191 887 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Col1a1P11087 1700072B07Rik-201ENSMUST00000191141 445 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Col1a1P11087 Poc1a-205ENSMUST00000191434 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col1a1P11087 Tspan3-203ENSMUST00000215906 842 ntTSL 3 BASIC17.66■□□□□ 0.42
Col1a1P11087 Dupd1-202ENSMUST00000224735 548 ntBASIC17.66■□□□□ 0.42
Col1a1P11087 Fthl17c-201ENSMUST00000075792 850 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Col1a1P11087 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col1a1P11087 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col1a1P11087 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col1a1P11087 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col1a1P11087 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col1a1P11087 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col1a1P11087 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col1a1P11087 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col1a1P11087 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col1a1P11087 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col1a1P11087 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Col1a1P11087 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col1a1P11087 Ngf-202ENSMUST00000106925 1187 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Col1a1P11087 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC17.65■□□□□ 0.42
Col1a1P11087 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Col1a1P11087 2610528J11Rik-201ENSMUST00000030261 958 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col1a1P11087 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col1a1P11087 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col1a1P11087 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col1a1P11087 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col1a1P11087 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col1a1P11087 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Col1a1P11087 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Col1a1P11087 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col1a1P11087 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col1a1P11087 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col1a1P11087 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col1a1P11087 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC17.64■□□□□ 0.41
Col1a1P11087 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Col1a1P11087 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
Col1a1P11087 Gm14042-201ENSMUST00000120139 833 ntBASIC17.64■□□□□ 0.41
Col1a1P11087 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Col1a1P11087 Gm16476-201ENSMUST00000221544 139 ntBASIC17.64■□□□□ 0.41
Col1a1P11087 Gm20445-201ENSMUST00000061905 565 ntBASIC17.64■□□□□ 0.41
Col1a1P11087 Ftl1-201ENSMUST00000094434 968 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col1a1P11087 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC17.64■□□□□ 0.41
Col1a1P11087 Dhrs4-201ENSMUST00000022821 1392 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col1a1P11087 Gm6756-201ENSMUST00000180647 1620 ntBASIC17.64■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 59.8 ms