Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Chmp6P0C0A3 Mbtps2-201ENSMUST00000058098 4797 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Chmp6P0C0A3 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Chmp6P0C0A3 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Chmp6P0C0A3 Dennd1a-201ENSMUST00000102787 4342 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Chmp6P0C0A3 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Chmp6P0C0A3 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Chmp6P0C0A3 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Chmp6P0C0A3 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC16.61■□□□□ 0.25
Chmp6P0C0A3 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Chmp6P0C0A3 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC16.61■□□□□ 0.25
Chmp6P0C0A3 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Chmp6P0C0A3 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Chmp6P0C0A3 Gm42901-201ENSMUST00000197735 3171 ntBASIC16.61■□□□□ 0.25
Chmp6P0C0A3 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Chmp6P0C0A3 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Chmp6P0C0A3 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Chmp6P0C0A3 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Chmp6P0C0A3 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Chmp6P0C0A3 Bptf-201ENSMUST00000057892 11488 ntAPPRIS P2 TSL 5 BASIC16.61■□□□□ 0.25
Chmp6P0C0A3 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Chmp6P0C0A3 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Chmp6P0C0A3 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Chmp6P0C0A3 Tead1-201ENSMUST00000059768 9964 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
Chmp6P0C0A3 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Chmp6P0C0A3 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Chmp6P0C0A3 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Chmp6P0C0A3 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Chmp6P0C0A3 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Chmp6P0C0A3 Synj2-210ENSMUST00000115791 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Chmp6P0C0A3 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Chmp6P0C0A3 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Chmp6P0C0A3 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Chmp6P0C0A3 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC16.6■□□□□ 0.25
Chmp6P0C0A3 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Chmp6P0C0A3 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
Chmp6P0C0A3 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Chmp6P0C0A3 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
Chmp6P0C0A3 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Chmp6P0C0A3 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC16.6■□□□□ 0.25
Chmp6P0C0A3 Gm6550-201ENSMUST00000187574 993 ntBASIC16.6■□□□□ 0.25
Chmp6P0C0A3 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC16.6■□□□□ 0.25
Chmp6P0C0A3 Gm9449-201ENSMUST00000207265 1011 ntBASIC16.6■□□□□ 0.25
Chmp6P0C0A3 AC093926.2-201ENSMUST00000214468 1228 ntBASIC16.6■□□□□ 0.25
Chmp6P0C0A3 AC138767.1-201ENSMUST00000222661 415 ntBASIC16.6■□□□□ 0.25
Chmp6P0C0A3 AC159106.1-201ENSMUST00000224421 690 ntBASIC16.6■□□□□ 0.25
Chmp6P0C0A3 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Chmp6P0C0A3 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
Chmp6P0C0A3 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Chmp6P0C0A3 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Chmp6P0C0A3 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Chmp6P0C0A3 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Chmp6P0C0A3 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Chmp6P0C0A3 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Chmp6P0C0A3 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Chmp6P0C0A3 Ppp1r15b-201ENSMUST00000052529 5594 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Chmp6P0C0A3 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Chmp6P0C0A3 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
Chmp6P0C0A3 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Chmp6P0C0A3 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Chmp6P0C0A3 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
Chmp6P0C0A3 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Chmp6P0C0A3 2810474O19Rik-202ENSMUST00000100765 5356 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Chmp6P0C0A3 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Chmp6P0C0A3 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Chmp6P0C0A3 Gm7222-201ENSMUST00000117512 906 ntBASIC16.59■□□□□ 0.25
Chmp6P0C0A3 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC16.59■□□□□ 0.25
Chmp6P0C0A3 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Chmp6P0C0A3 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Chmp6P0C0A3 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Chmp6P0C0A3 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
Chmp6P0C0A3 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
Chmp6P0C0A3 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC16.59■□□□□ 0.25
Chmp6P0C0A3 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC16.59■□□□□ 0.25
Chmp6P0C0A3 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Chmp6P0C0A3 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Chmp6P0C0A3 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Chmp6P0C0A3 Itga8-201ENSMUST00000028106 5812 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Chmp6P0C0A3 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Chmp6P0C0A3 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Chmp6P0C0A3 1700066M21Rik-201ENSMUST00000042734 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Chmp6P0C0A3 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Chmp6P0C0A3 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
Chmp6P0C0A3 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
Chmp6P0C0A3 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
Chmp6P0C0A3 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
Chmp6P0C0A3 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Chmp6P0C0A3 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC16.58■□□□□ 0.24
Chmp6P0C0A3 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Chmp6P0C0A3 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC16.58■□□□□ 0.24
Chmp6P0C0A3 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Chmp6P0C0A3 Psmb4-201ENSMUST00000005923 1183 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Chmp6P0C0A3 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Chmp6P0C0A3 Gm29340-201ENSMUST00000188763 3854 ntBASIC16.58■□□□□ 0.24
Chmp6P0C0A3 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Chmp6P0C0A3 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Chmp6P0C0A3 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.24
Chmp6P0C0A3 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Chmp6P0C0A3 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Chmp6P0C0A3 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 63.7 ms