Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Lmx1bO88609 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC13.83□□□□□ -0.2
Lmx1bO88609 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC13.83□□□□□ -0.2
Lmx1bO88609 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Lmx1bO88609 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Lmx1bO88609 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Lmx1bO88609 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC13.83□□□□□ -0.2
Lmx1bO88609 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Lmx1bO88609 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Lmx1bO88609 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Lmx1bO88609 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
Lmx1bO88609 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
Lmx1bO88609 Appl1-201ENSMUST00000036570 7642 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Lmx1bO88609 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Lmx1bO88609 AC163637.1-201ENSMUST00000215491 1894 ntBASIC13.82□□□□□ -0.2
Lmx1bO88609 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Lmx1bO88609 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Lmx1bO88609 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
Lmx1bO88609 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Lmx1bO88609 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Lmx1bO88609 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Lmx1bO88609 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Lmx1bO88609 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC13.82□□□□□ -0.2
Lmx1bO88609 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Lmx1bO88609 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC13.82□□□□□ -0.2
Lmx1bO88609 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Lmx1bO88609 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Lmx1bO88609 Josd2-202ENSMUST00000117324 858 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Lmx1bO88609 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC13.82□□□□□ -0.2
Lmx1bO88609 Evx1-202ENSMUST00000129243 1034 ntTSL 3 BASIC13.82□□□□□ -0.2
Lmx1bO88609 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC13.82□□□□□ -0.2
Lmx1bO88609 Gm25925-201ENSMUST00000158314 306 ntBASIC13.82□□□□□ -0.2
Lmx1bO88609 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC13.82□□□□□ -0.2
Lmx1bO88609 Gm29456-201ENSMUST00000189894 768 ntTSL 3 BASIC13.82□□□□□ -0.2
Lmx1bO88609 Gm45231-201ENSMUST00000208629 1064 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Lmx1bO88609 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Lmx1bO88609 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Lmx1bO88609 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Lmx1bO88609 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Lmx1bO88609 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Lmx1bO88609 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Lmx1bO88609 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Lmx1bO88609 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Lmx1bO88609 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Lmx1bO88609 Lancl1-203ENSMUST00000119559 1385 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Lmx1bO88609 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Lmx1bO88609 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Lmx1bO88609 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Lmx1bO88609 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Lmx1bO88609 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Lmx1bO88609 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Lmx1bO88609 Gm14026-201ENSMUST00000120625 1789 ntBASIC13.81□□□□□ -0.2
Lmx1bO88609 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Lmx1bO88609 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Lmx1bO88609 6430710C18Rik-203ENSMUST00000136807 1540 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Lmx1bO88609 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Lmx1bO88609 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Lmx1bO88609 Gm5648-201ENSMUST00000122244 1587 ntBASIC13.81□□□□□ -0.2
Lmx1bO88609 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Lmx1bO88609 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
Lmx1bO88609 Gm13597-201ENSMUST00000121239 375 ntBASIC13.81□□□□□ -0.2
Lmx1bO88609 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC13.81□□□□□ -0.2
Lmx1bO88609 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Lmx1bO88609 Mir8117-201ENSMUST00000184773 107 ntBASIC13.81□□□□□ -0.2
Lmx1bO88609 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC13.81□□□□□ -0.2
Lmx1bO88609 Gm30097-202ENSMUST00000194580 329 ntTSL 3 BASIC13.81□□□□□ -0.2
Lmx1bO88609 Gm2756-201ENSMUST00000195851 400 ntBASIC13.81□□□□□ -0.2
Lmx1bO88609 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Lmx1bO88609 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Lmx1bO88609 Rab22a-201ENSMUST00000029024 7155 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Lmx1bO88609 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Lmx1bO88609 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Lmx1bO88609 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Lmx1bO88609 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Lmx1bO88609 Gm38318-201ENSMUST00000195769 1706 ntBASIC13.81□□□□□ -0.2
Lmx1bO88609 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Lmx1bO88609 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Lmx1bO88609 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Lmx1bO88609 Myh14-204ENSMUST00000207775 6499 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Lmx1bO88609 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Lmx1bO88609 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Lmx1bO88609 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Lmx1bO88609 1700066M21Rik-201ENSMUST00000042734 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Lmx1bO88609 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Lmx1bO88609 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Lmx1bO88609 Ap1g1-202ENSMUST00000093157 6899 ntAPPRIS P3 TSL 5 BASIC13.8□□□□□ -0.2
Lmx1bO88609 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Lmx1bO88609 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Lmx1bO88609 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Lmx1bO88609 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Lmx1bO88609 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Lmx1bO88609 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Lmx1bO88609 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Lmx1bO88609 Gm4913-201ENSMUST00000117075 1290 ntBASIC13.8□□□□□ -0.2
Lmx1bO88609 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Lmx1bO88609 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Lmx1bO88609 Gm36972-201ENSMUST00000194000 676 ntTSL 3 BASIC13.8□□□□□ -0.2
Lmx1bO88609 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Lmx1bO88609 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Lmx1bO88609 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 28 ms