Protein–RNA interactions for Protein: O88544

Cops4, COP9 signalosome complex subunit 4, mousemouse

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cops4O88544 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Cops4O88544 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
Cops4O88544 Sike1-201ENSMUST00000029447 7375 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cops4O88544 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cops4O88544 Irx3os-201ENSMUST00000062522 2988 ntTSL 5 BASIC14.11□□□□□ -0.15
Cops4O88544 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cops4O88544 Kirrel-202ENSMUST00000107618 7278 ntAPPRIS P2 TSL 5 BASIC14.11□□□□□ -0.15
Cops4O88544 Gm37297-201ENSMUST00000192974 2384 ntBASIC14.11□□□□□ -0.15
Cops4O88544 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cops4O88544 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cops4O88544 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cops4O88544 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Cops4O88544 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cops4O88544 Lin54-201ENSMUST00000046154 4451 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cops4O88544 Dnaja1-210ENSMUST00000164233 5622 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Cops4O88544 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cops4O88544 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cops4O88544 Fbxl12-205ENSMUST00000140702 1555 ntBASIC14.1□□□□□ -0.15
Cops4O88544 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cops4O88544 Clcnka-201ENSMUST00000042617 2428 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cops4O88544 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Cops4O88544 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Cops4O88544 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Cops4O88544 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Cops4O88544 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC14.1□□□□□ -0.15
Cops4O88544 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC14.1□□□□□ -0.15
Cops4O88544 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cops4O88544 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cops4O88544 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cops4O88544 Gm9987-201ENSMUST00000069768 567 ntBASIC14.1□□□□□ -0.15
Cops4O88544 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Cops4O88544 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cops4O88544 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cops4O88544 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Cops4O88544 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC14.1□□□□□ -0.15
Cops4O88544 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Cops4O88544 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cops4O88544 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC14.1□□□□□ -0.15
Cops4O88544 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cops4O88544 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC14.1□□□□□ -0.15
Cops4O88544 B4galt3-202ENSMUST00000111313 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cops4O88544 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Cops4O88544 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Cops4O88544 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Cops4O88544 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
Cops4O88544 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cops4O88544 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cops4O88544 Gm5049-201ENSMUST00000195878 1590 ntBASIC14.09□□□□□ -0.15
Cops4O88544 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cops4O88544 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cops4O88544 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cops4O88544 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cops4O88544 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Cops4O88544 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cops4O88544 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cops4O88544 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cops4O88544 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cops4O88544 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Cops4O88544 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC14.09□□□□□ -0.15
Cops4O88544 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC14.09□□□□□ -0.15
Cops4O88544 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cops4O88544 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Cops4O88544 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Cops4O88544 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cops4O88544 Slc43a1-203ENSMUST00000111625 2487 ntAPPRIS P4 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cops4O88544 AC167013.2-201ENSMUST00000228520 2684 ntBASIC14.09□□□□□ -0.15
Cops4O88544 Olfr718-ps1-203ENSMUST00000215102 4913 ntAPPRIS P5 TSL 5 BASIC14.09□□□□□ -0.15
Cops4O88544 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cops4O88544 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
Cops4O88544 Bmper-201ENSMUST00000071982 3791 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cops4O88544 Zfp503-201ENSMUST00000043409 4216 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cops4O88544 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cops4O88544 Wdr90-201ENSMUST00000079461 5991 ntAPPRIS P2 TSL 5 BASIC14.09□□□□□ -0.15
Cops4O88544 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cops4O88544 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
Cops4O88544 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Cops4O88544 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cops4O88544 Slit1-202ENSMUST00000166496 4556 ntTSL 5 BASIC14.08□□□□□ -0.15
Cops4O88544 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Cops4O88544 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Cops4O88544 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
Cops4O88544 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC14.08□□□□□ -0.15
Cops4O88544 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Cops4O88544 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Cops4O88544 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Cops4O88544 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Cops4O88544 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
Cops4O88544 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Cops4O88544 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Cops4O88544 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Cops4O88544 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Cops4O88544 Gm11860-201ENSMUST00000122346 1010 ntBASIC14.08□□□□□ -0.16
Cops4O88544 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Cops4O88544 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC14.08□□□□□ -0.16
Cops4O88544 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Cops4O88544 Gm7367-201ENSMUST00000057611 492 ntBASIC14.08□□□□□ -0.16
Cops4O88544 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC14.08□□□□□ -0.16
Cops4O88544 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Cops4O88544 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Cops4O88544 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC14.08□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 28.3 ms