Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Col5a1O88207 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Col5a1O88207 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col5a1O88207 Gm13517-201ENSMUST00000120782 1495 ntBASIC13.62□□□□□ -0.23
Col5a1O88207 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col5a1O88207 Nt5c3b-201ENSMUST00000092688 1399 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col5a1O88207 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col5a1O88207 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Col5a1O88207 Snrnp27-202ENSMUST00000113683 1005 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Col5a1O88207 Gm15321-201ENSMUST00000121290 288 ntBASIC13.62□□□□□ -0.23
Col5a1O88207 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Col5a1O88207 Mettl26-203ENSMUST00000163356 534 ntTSL 5 BASIC13.62□□□□□ -0.23
Col5a1O88207 Gm8602-201ENSMUST00000184045 607 ntBASIC13.62□□□□□ -0.23
Col5a1O88207 Il31-203ENSMUST00000198901 984 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Col5a1O88207 Pim2-204ENSMUST00000223553 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col5a1O88207 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col5a1O88207 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col5a1O88207 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col5a1O88207 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col5a1O88207 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col5a1O88207 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Col5a1O88207 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Col5a1O88207 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Col5a1O88207 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC13.61□□□□□ -0.23
Col5a1O88207 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col5a1O88207 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col5a1O88207 Prob1-201ENSMUST00000097619 3021 ntBASIC13.61□□□□□ -0.23
Col5a1O88207 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col5a1O88207 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Col5a1O88207 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col5a1O88207 Rgs19-203ENSMUST00000108771 1110 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Col5a1O88207 Rgs19-205ENSMUST00000108776 1216 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col5a1O88207 Apoo-204ENSMUST00000113898 784 ntAPPRIS P1 TSL 3 BASIC13.61□□□□□ -0.23
Col5a1O88207 Gm11478-201ENSMUST00000117851 599 ntBASIC13.61□□□□□ -0.23
Col5a1O88207 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC13.61□□□□□ -0.23
Col5a1O88207 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC13.61□□□□□ -0.23
Col5a1O88207 Swi5-201ENSMUST00000050410 775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col5a1O88207 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
Col5a1O88207 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col5a1O88207 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col5a1O88207 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col5a1O88207 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col5a1O88207 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC13.61□□□□□ -0.23
Col5a1O88207 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col5a1O88207 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Col5a1O88207 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col5a1O88207 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col5a1O88207 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Col5a1O88207 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col5a1O88207 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col5a1O88207 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC13.6□□□□□ -0.23
Col5a1O88207 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col5a1O88207 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Col5a1O88207 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Col5a1O88207 Klk2-ps-201ENSMUST00000205342 571 ntBASIC13.6□□□□□ -0.23
Col5a1O88207 AC149294.4-201ENSMUST00000227870 882 ntBASIC13.6□□□□□ -0.23
Col5a1O88207 Nudt17-201ENSMUST00000029742 1039 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Col5a1O88207 Nradd-201ENSMUST00000035069 1223 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col5a1O88207 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col5a1O88207 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC13.6□□□□□ -0.23
Col5a1O88207 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col5a1O88207 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col5a1O88207 Cldn14-204ENSMUST00000169391 1456 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
Col5a1O88207 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col5a1O88207 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col5a1O88207 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC13.6□□□□□ -0.23
Col5a1O88207 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Col5a1O88207 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col5a1O88207 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col5a1O88207 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col5a1O88207 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col5a1O88207 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
Col5a1O88207 Gm8096-201ENSMUST00000209921 1591 ntBASIC13.6□□□□□ -0.23
Col5a1O88207 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC13.6□□□□□ -0.23
Col5a1O88207 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Col5a1O88207 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
Col5a1O88207 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Col5a1O88207 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col5a1O88207 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC13.59□□□□□ -0.23
Col5a1O88207 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
Col5a1O88207 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC13.59□□□□□ -0.23
Col5a1O88207 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC13.59□□□□□ -0.23
Col5a1O88207 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col5a1O88207 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col5a1O88207 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col5a1O88207 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
Col5a1O88207 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC13.59□□□□□ -0.23
Col5a1O88207 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC13.59□□□□□ -0.23
Col5a1O88207 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
Col5a1O88207 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col5a1O88207 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Col5a1O88207 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Col5a1O88207 Lrcol1-202ENSMUST00000185691 764 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col5a1O88207 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC13.59□□□□□ -0.23
Col5a1O88207 Crybb2-201ENSMUST00000031295 724 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col5a1O88207 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col5a1O88207 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col5a1O88207 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Col5a1O88207 Zfyve19-202ENSMUST00000102519 1505 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Col5a1O88207 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 46.2 ms