Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.24
Trim54Q9ERP3 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC16.52■□□□□ 0.24
Trim54Q9ERP3 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trim54Q9ERP3 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trim54Q9ERP3 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trim54Q9ERP3 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trim54Q9ERP3 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trim54Q9ERP3 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC16.52■□□□□ 0.23
Trim54Q9ERP3 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trim54Q9ERP3 Foxo1-201ENSMUST00000053764 8665 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trim54Q9ERP3 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trim54Q9ERP3 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC16.52■□□□□ 0.23
Trim54Q9ERP3 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trim54Q9ERP3 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Trim54Q9ERP3 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC16.51■□□□□ 0.23
Trim54Q9ERP3 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC16.51■□□□□ 0.23
Trim54Q9ERP3 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim54Q9ERP3 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Trim54Q9ERP3 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim54Q9ERP3 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim54Q9ERP3 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC16.51■□□□□ 0.23
Trim54Q9ERP3 Gm16198-201ENSMUST00000118766 670 ntBASIC16.51■□□□□ 0.23
Trim54Q9ERP3 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC16.51■□□□□ 0.23
Trim54Q9ERP3 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim54Q9ERP3 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Trim54Q9ERP3 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim54Q9ERP3 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC16.51■□□□□ 0.23
Trim54Q9ERP3 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Trim54Q9ERP3 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim54Q9ERP3 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC16.51■□□□□ 0.23
Trim54Q9ERP3 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim54Q9ERP3 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim54Q9ERP3 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Trim54Q9ERP3 Cep85l-205ENSMUST00000220443 7425 ntAPPRIS P2 TSL 5 BASIC16.51■□□□□ 0.23
Trim54Q9ERP3 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim54Q9ERP3 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim54Q9ERP3 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim54Q9ERP3 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Trim54Q9ERP3 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC16.5■□□□□ 0.23
Trim54Q9ERP3 Anks1-203ENSMUST00000114842 5610 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim54Q9ERP3 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Trim54Q9ERP3 Grid2-201ENSMUST00000095852 5860 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim54Q9ERP3 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Trim54Q9ERP3 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC16.5■□□□□ 0.23
Trim54Q9ERP3 Gm37171-201ENSMUST00000192636 1185 ntBASIC16.5■□□□□ 0.23
Trim54Q9ERP3 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim54Q9ERP3 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC16.5■□□□□ 0.23
Trim54Q9ERP3 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim54Q9ERP3 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Trim54Q9ERP3 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Trim54Q9ERP3 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim54Q9ERP3 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim54Q9ERP3 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Trim54Q9ERP3 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim54Q9ERP3 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim54Q9ERP3 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim54Q9ERP3 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim54Q9ERP3 AC130669.1-201ENSMUST00000228537 1672 ntBASIC16.5■□□□□ 0.23
Trim54Q9ERP3 Cd82-202ENSMUST00000099696 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim54Q9ERP3 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim54Q9ERP3 Rasgrp1-207ENSMUST00000178884 5104 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim54Q9ERP3 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Trim54Q9ERP3 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim54Q9ERP3 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim54Q9ERP3 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim54Q9ERP3 AC025913.2-201ENSMUST00000220136 1766 ntBASIC16.49■□□□□ 0.23
Trim54Q9ERP3 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim54Q9ERP3 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC16.49■□□□□ 0.23
Trim54Q9ERP3 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim54Q9ERP3 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim54Q9ERP3 Rpph1-201ENSMUST00000175096 319 ntBASIC16.49■□□□□ 0.23
Trim54Q9ERP3 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Trim54Q9ERP3 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Trim54Q9ERP3 1700025N23Rik-201ENSMUST00000186189 915 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Trim54Q9ERP3 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC16.49■□□□□ 0.23
Trim54Q9ERP3 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim54Q9ERP3 Gpr146-202ENSMUST00000053120 1040 ntBASIC16.49■□□□□ 0.23
Trim54Q9ERP3 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC16.49■□□□□ 0.23
Trim54Q9ERP3 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim54Q9ERP3 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
Trim54Q9ERP3 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Trim54Q9ERP3 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim54Q9ERP3 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim54Q9ERP3 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim54Q9ERP3 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim54Q9ERP3 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim54Q9ERP3 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim54Q9ERP3 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim54Q9ERP3 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim54Q9ERP3 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim54Q9ERP3 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim54Q9ERP3 Gm7901-201ENSMUST00000120430 1597 ntBASIC16.48■□□□□ 0.23
Trim54Q9ERP3 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC16.48■□□□□ 0.23
Trim54Q9ERP3 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim54Q9ERP3 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC16.48■□□□□ 0.23
Trim54Q9ERP3 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Trim54Q9ERP3 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC16.48■□□□□ 0.23
Trim54Q9ERP3 Mir6956-201ENSMUST00000183598 62 ntBASIC16.48■□□□□ 0.23
Trim54Q9ERP3 Gm5312-201ENSMUST00000203728 547 ntBASIC16.48■□□□□ 0.23
Trim54Q9ERP3 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC16.48■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 47.7 ms