Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Lima1Q9ERG0 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Lima1Q9ERG0 Sorbs3-204ENSMUST00000227929 2460 ntBASIC15.12■□□□□ 0.01
Lima1Q9ERG0 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Lima1Q9ERG0 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Lima1Q9ERG0 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Lima1Q9ERG0 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC15.12■□□□□ 0.01
Lima1Q9ERG0 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Lima1Q9ERG0 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Lima1Q9ERG0 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC15.12■□□□□ 0.01
Lima1Q9ERG0 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Lima1Q9ERG0 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Lima1Q9ERG0 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Lima1Q9ERG0 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Lima1Q9ERG0 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Lima1Q9ERG0 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Lima1Q9ERG0 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Lima1Q9ERG0 Anks1b-205ENSMUST00000179694 2663 ntTSL 5 BASIC15.12■□□□□ 0.01
Lima1Q9ERG0 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC15.12■□□□□ 0.01
Lima1Q9ERG0 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Lima1Q9ERG0 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Lima1Q9ERG0 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Lima1Q9ERG0 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC15.12■□□□□ 0.01
Lima1Q9ERG0 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC15.12■□□□□ 0.01
Lima1Q9ERG0 Agps-201ENSMUST00000047232 7359 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Lima1Q9ERG0 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Lima1Q9ERG0 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Lima1Q9ERG0 Gm7669-201ENSMUST00000210184 1603 ntBASIC15.11■□□□□ 0.01
Lima1Q9ERG0 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Lima1Q9ERG0 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Lima1Q9ERG0 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Lima1Q9ERG0 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Lima1Q9ERG0 Gm12134-201ENSMUST00000122109 520 ntBASIC15.11■□□□□ 0.01
Lima1Q9ERG0 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Lima1Q9ERG0 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC15.11■□□□□ 0.01
Lima1Q9ERG0 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Lima1Q9ERG0 AC130713.1-201ENSMUST00000228853 1096 ntBASIC15.11■□□□□ 0.01
Lima1Q9ERG0 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Lima1Q9ERG0 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Lima1Q9ERG0 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Lima1Q9ERG0 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Lima1Q9ERG0 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Lima1Q9ERG0 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Lima1Q9ERG0 Moxd1-201ENSMUST00000095784 3090 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Lima1Q9ERG0 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Lima1Q9ERG0 Sema4c-201ENSMUST00000114991 3773 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Lima1Q9ERG0 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Lima1Q9ERG0 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Lima1Q9ERG0 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Lima1Q9ERG0 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Lima1Q9ERG0 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Lima1Q9ERG0 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC15.11■□□□□ 0.01
Lima1Q9ERG0 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Lima1Q9ERG0 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC15.1■□□□□ 0.01
Lima1Q9ERG0 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Lima1Q9ERG0 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Lima1Q9ERG0 Gemin5-202ENSMUST00000102711 4919 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Lima1Q9ERG0 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Lima1Q9ERG0 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Lima1Q9ERG0 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Lima1Q9ERG0 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Lima1Q9ERG0 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Lima1Q9ERG0 Ap5m1-205ENSMUST00000227431 3757 ntBASIC15.1■□□□□ 0.01
Lima1Q9ERG0 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Lima1Q9ERG0 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Lima1Q9ERG0 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Lima1Q9ERG0 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC15.1■□□□□ 0.01
Lima1Q9ERG0 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Lima1Q9ERG0 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Lima1Q9ERG0 Gm6257-201ENSMUST00000163864 910 ntBASIC15.1■□□□□ 0.01
Lima1Q9ERG0 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Lima1Q9ERG0 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Lima1Q9ERG0 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC15.1■□□□□ 0.01
Lima1Q9ERG0 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Lima1Q9ERG0 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Lima1Q9ERG0 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Lima1Q9ERG0 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Lima1Q9ERG0 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Lima1Q9ERG0 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Lima1Q9ERG0 Itgav-202ENSMUST00000111740 6788 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Lima1Q9ERG0 Ptprm-202ENSMUST00000223982 4802 ntAPPRIS P2 BASIC15.1■□□□□ 0.01
Lima1Q9ERG0 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Lima1Q9ERG0 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Lima1Q9ERG0 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Lima1Q9ERG0 Sowaha-201ENSMUST00000104955 3702 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Lima1Q9ERG0 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Lima1Q9ERG0 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Lima1Q9ERG0 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC15.09■□□□□ 0.01
Lima1Q9ERG0 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Lima1Q9ERG0 Irx3os-201ENSMUST00000062522 2988 ntTSL 5 BASIC15.09■□□□□ 0.01
Lima1Q9ERG0 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC15.09■□□□□ 0.01
Lima1Q9ERG0 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Lima1Q9ERG0 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Lima1Q9ERG0 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Lima1Q9ERG0 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Lima1Q9ERG0 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Lima1Q9ERG0 Tbc1d30-201ENSMUST00000064107 5695 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Lima1Q9ERG0 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Lima1Q9ERG0 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Lima1Q9ERG0 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms