Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Ccdc9Q8VC31 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Ccdc9Q8VC31 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Ccdc9Q8VC31 Raver1-202ENSMUST00000217282 4234 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
Ccdc9Q8VC31 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Ccdc9Q8VC31 Exo5-204ENSMUST00000177880 1969 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
Ccdc9Q8VC31 Exo5-201ENSMUST00000030375 1996 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Ccdc9Q8VC31 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Ccdc9Q8VC31 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Ccdc9Q8VC31 Hsph1-201ENSMUST00000074846 3240 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Ccdc9Q8VC31 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
Ccdc9Q8VC31 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
Ccdc9Q8VC31 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Ccdc9Q8VC31 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Ccdc9Q8VC31 Adad1-203ENSMUST00000144629 3101 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Ccdc9Q8VC31 St8sia3-201ENSMUST00000025477 6282 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Ccdc9Q8VC31 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Ccdc9Q8VC31 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Ccdc9Q8VC31 Sike1-201ENSMUST00000029447 7375 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Ccdc9Q8VC31 Gm5643-201ENSMUST00000117081 966 ntBASIC18.43■□□□□ 0.54
Ccdc9Q8VC31 Gm23547-201ENSMUST00000158210 271 ntBASIC18.43■□□□□ 0.54
Ccdc9Q8VC31 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC18.43■□□□□ 0.54
Ccdc9Q8VC31 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC18.43■□□□□ 0.54
Ccdc9Q8VC31 Zfp467-203ENSMUST00000114558 3115 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Ccdc9Q8VC31 Pqlc2-202ENSMUST00000105801 2756 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
Ccdc9Q8VC31 Rarg-201ENSMUST00000043172 2953 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
Ccdc9Q8VC31 Cacna1g-207ENSMUST00000107789 8383 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
Ccdc9Q8VC31 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
Ccdc9Q8VC31 Prss36-202ENSMUST00000118755 3028 ntAPPRIS P2 TSL 5 BASIC18.43■□□□□ 0.54
Ccdc9Q8VC31 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC18.43■□□□□ 0.54
Ccdc9Q8VC31 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Ccdc9Q8VC31 Slc16a13-201ENSMUST00000060010 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Ccdc9Q8VC31 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
Ccdc9Q8VC31 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ccdc9Q8VC31 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ccdc9Q8VC31 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Ccdc9Q8VC31 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC18.42■□□□□ 0.54
Ccdc9Q8VC31 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ccdc9Q8VC31 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ccdc9Q8VC31 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ccdc9Q8VC31 Zeb2-211ENSMUST00000153561 2070 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Ccdc9Q8VC31 Gnaz-202ENSMUST00000159991 3331 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ccdc9Q8VC31 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ccdc9Q8VC31 Kif21b-201ENSMUST00000075164 9115 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
Ccdc9Q8VC31 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Ccdc9Q8VC31 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Ccdc9Q8VC31 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC18.42■□□□□ 0.54
Ccdc9Q8VC31 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ccdc9Q8VC31 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ccdc9Q8VC31 Synj1-203ENSMUST00000121759 7090 ntAPPRIS P4 TSL 5 BASIC18.42■□□□□ 0.54
Ccdc9Q8VC31 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ccdc9Q8VC31 Alox12b-201ENSMUST00000036424 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ccdc9Q8VC31 Hdgfl2-210ENSMUST00000225843 2238 ntAPPRIS ALT2 BASIC18.42■□□□□ 0.54
Ccdc9Q8VC31 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Ccdc9Q8VC31 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ccdc9Q8VC31 Amotl2-201ENSMUST00000035121 4328 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ccdc9Q8VC31 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ccdc9Q8VC31 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ccdc9Q8VC31 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ccdc9Q8VC31 Cyp2u1-201ENSMUST00000106337 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ccdc9Q8VC31 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
Ccdc9Q8VC31 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ccdc9Q8VC31 Mbnl2-204ENSMUST00000227012 2390 ntBASIC18.41■□□□□ 0.54
Ccdc9Q8VC31 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ccdc9Q8VC31 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC18.41■□□□□ 0.54
Ccdc9Q8VC31 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC18.41■□□□□ 0.54
Ccdc9Q8VC31 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC18.41■□□□□ 0.54
Ccdc9Q8VC31 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC18.41■□□□□ 0.54
Ccdc9Q8VC31 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ccdc9Q8VC31 Gm18025-201ENSMUST00000221733 862 ntBASIC18.41■□□□□ 0.54
Ccdc9Q8VC31 AC159205.3-201ENSMUST00000224614 874 ntBASIC18.41■□□□□ 0.54
Ccdc9Q8VC31 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
Ccdc9Q8VC31 AC162938.1-201ENSMUST00000213140 2323 ntBASIC18.41■□□□□ 0.54
Ccdc9Q8VC31 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
Ccdc9Q8VC31 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ccdc9Q8VC31 Pik3c2b-201ENSMUST00000077730 7928 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Ccdc9Q8VC31 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC18.41■□□□□ 0.54
Ccdc9Q8VC31 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ccdc9Q8VC31 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Ccdc9Q8VC31 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Ccdc9Q8VC31 Tgm6-201ENSMUST00000028888 3327 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ccdc9Q8VC31 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ccdc9Q8VC31 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Ccdc9Q8VC31 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ccdc9Q8VC31 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC18.4■□□□□ 0.54
Ccdc9Q8VC31 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC18.4■□□□□ 0.54
Ccdc9Q8VC31 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC18.4■□□□□ 0.54
Ccdc9Q8VC31 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ccdc9Q8VC31 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ccdc9Q8VC31 Spcs1-207ENSMUST00000228767 1008 ntBASIC18.4■□□□□ 0.54
Ccdc9Q8VC31 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC18.4■□□□□ 0.54
Ccdc9Q8VC31 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ccdc9Q8VC31 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ccdc9Q8VC31 Mapk7-202ENSMUST00000101085 3254 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Ccdc9Q8VC31 Kcnd3-203ENSMUST00000118360 2668 ntAPPRIS P4 TSL 5 BASIC18.4■□□□□ 0.54
Ccdc9Q8VC31 Slc52a3-201ENSMUST00000073228 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ccdc9Q8VC31 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Ccdc9Q8VC31 Apc2-202ENSMUST00000105359 9173 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
Ccdc9Q8VC31 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Ccdc9Q8VC31 Stk16-201ENSMUST00000027401 2876 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 46.7 ms