Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 AC132104.2-201ENSMUST00000215011 266 ntBASIC18■□□□□ 0.47
Trim56Q80VI1 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim56Q80VI1 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim56Q80VI1 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC18■□□□□ 0.47
Trim56Q80VI1 Lrwd1-201ENSMUST00000006301 2473 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim56Q80VI1 Gm43352-201ENSMUST00000196419 3065 ntBASIC18■□□□□ 0.47
Trim56Q80VI1 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim56Q80VI1 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim56Q80VI1 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC17.99■□□□□ 0.47
Trim56Q80VI1 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim56Q80VI1 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
Trim56Q80VI1 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim56Q80VI1 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim56Q80VI1 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim56Q80VI1 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
Trim56Q80VI1 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Trim56Q80VI1 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim56Q80VI1 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim56Q80VI1 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim56Q80VI1 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Trim56Q80VI1 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim56Q80VI1 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim56Q80VI1 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim56Q80VI1 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC17.99■□□□□ 0.47
Trim56Q80VI1 Rps19-201ENSMUST00000108428 1284 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Trim56Q80VI1 H2af-ps-201ENSMUST00000119066 295 ntBASIC17.99■□□□□ 0.47
Trim56Q80VI1 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim56Q80VI1 Ccnd3-208ENSMUST00000182539 931 ntTSL 2 BASIC17.99■□□□□ 0.47
Trim56Q80VI1 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC17.99■□□□□ 0.47
Trim56Q80VI1 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim56Q80VI1 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC17.99■□□□□ 0.47
Trim56Q80VI1 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Trim56Q80VI1 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Trim56Q80VI1 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim56Q80VI1 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim56Q80VI1 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim56Q80VI1 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim56Q80VI1 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim56Q80VI1 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC17.99■□□□□ 0.47
Trim56Q80VI1 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim56Q80VI1 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim56Q80VI1 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim56Q80VI1 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim56Q80VI1 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim56Q80VI1 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim56Q80VI1 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC17.98■□□□□ 0.47
Trim56Q80VI1 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Trim56Q80VI1 Fis1-202ENSMUST00000111094 948 ntTSL 2 BASIC17.98■□□□□ 0.47
Trim56Q80VI1 Gm12008-201ENSMUST00000117791 755 ntBASIC17.98■□□□□ 0.47
Trim56Q80VI1 Fam241b-208ENSMUST00000142796 1135 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim56Q80VI1 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC17.98■□□□□ 0.47
Trim56Q80VI1 Mir8117-201ENSMUST00000184773 107 ntBASIC17.98■□□□□ 0.47
Trim56Q80VI1 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC17.98■□□□□ 0.47
Trim56Q80VI1 Gm44492-201ENSMUST00000197012 141 ntBASIC17.98■□□□□ 0.47
Trim56Q80VI1 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim56Q80VI1 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Trim56Q80VI1 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC17.98■□□□□ 0.47
Trim56Q80VI1 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Trim56Q80VI1 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim56Q80VI1 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Trim56Q80VI1 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim56Q80VI1 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim56Q80VI1 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
Trim56Q80VI1 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim56Q80VI1 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
Trim56Q80VI1 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trim56Q80VI1 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trim56Q80VI1 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Trim56Q80VI1 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
Trim56Q80VI1 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trim56Q80VI1 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trim56Q80VI1 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trim56Q80VI1 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trim56Q80VI1 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trim56Q80VI1 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trim56Q80VI1 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trim56Q80VI1 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC17.97■□□□□ 0.47
Trim56Q80VI1 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC17.97■□□□□ 0.47
Trim56Q80VI1 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC17.97■□□□□ 0.47
Trim56Q80VI1 AC154572.2-201ENSMUST00000225105 997 ntBASIC17.97■□□□□ 0.47
Trim56Q80VI1 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trim56Q80VI1 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trim56Q80VI1 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trim56Q80VI1 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC17.97■□□□□ 0.47
Trim56Q80VI1 D930028M14Rik-201ENSMUST00000098678 1003 ntTSL 2 BASIC17.97■□□□□ 0.47
Trim56Q80VI1 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC17.97■□□□□ 0.47
Trim56Q80VI1 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trim56Q80VI1 Celf4-206ENSMUST00000224553 1729 ntBASIC17.97■□□□□ 0.47
Trim56Q80VI1 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trim56Q80VI1 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC17.97■□□□□ 0.47
Trim56Q80VI1 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Trim56Q80VI1 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trim56Q80VI1 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Trim56Q80VI1 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC17.96■□□□□ 0.47
Trim56Q80VI1 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trim56Q80VI1 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trim56Q80VI1 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
Trim56Q80VI1 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trim56Q80VI1 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC17.96■□□□□ 0.47
Trim56Q80VI1 Gm12892-201ENSMUST00000117367 1146 ntBASIC17.96■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms