Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Gm15693-201ENSMUST00000120470 637 ntBASIC19.75■□□□□ 0.75
Trim28Q62318 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Trim28Q62318 Gm18737-201ENSMUST00000173594 937 ntBASIC19.75■□□□□ 0.75
Trim28Q62318 Gm27920-201ENSMUST00000183953 96 ntBASIC19.75■□□□□ 0.75
Trim28Q62318 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Trim28Q62318 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Trim28Q62318 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Trim28Q62318 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC19.75■□□□□ 0.75
Trim28Q62318 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Trim28Q62318 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Trim28Q62318 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Trim28Q62318 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC19.75■□□□□ 0.75
Trim28Q62318 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Trim28Q62318 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC19.75■□□□□ 0.75
Trim28Q62318 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
Trim28Q62318 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Trim28Q62318 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Trim28Q62318 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
Trim28Q62318 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Trim28Q62318 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Trim28Q62318 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
Trim28Q62318 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Trim28Q62318 Gm11543-201ENSMUST00000120758 370 ntBASIC19.74■□□□□ 0.75
Trim28Q62318 AC155937.1-202ENSMUST00000156229 621 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
Trim28Q62318 Hsf4-207ENSMUST00000174837 1251 ntTSL 5 BASIC19.74■□□□□ 0.75
Trim28Q62318 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Trim28Q62318 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Trim28Q62318 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Trim28Q62318 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Trim28Q62318 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Trim28Q62318 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC19.74■□□□□ 0.75
Trim28Q62318 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
Trim28Q62318 Gm42934-201ENSMUST00000196920 1345 ntBASIC19.74■□□□□ 0.75
Trim28Q62318 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Trim28Q62318 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
Trim28Q62318 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim28Q62318 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim28Q62318 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Trim28Q62318 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim28Q62318 Aurka-202ENSMUST00000109139 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim28Q62318 Aurka-201ENSMUST00000028997 1905 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim28Q62318 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim28Q62318 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim28Q62318 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim28Q62318 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim28Q62318 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC19.73■□□□□ 0.75
Trim28Q62318 Gm26771-201ENSMUST00000180472 1082 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Trim28Q62318 Gm29541-201ENSMUST00000191351 678 ntBASIC19.73■□□□□ 0.75
Trim28Q62318 Gm10253-201ENSMUST00000194270 940 ntBASIC19.73■□□□□ 0.75
Trim28Q62318 Klk2-ps-201ENSMUST00000205342 571 ntBASIC19.73■□□□□ 0.75
Trim28Q62318 Gzma-201ENSMUST00000023897 878 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim28Q62318 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim28Q62318 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim28Q62318 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
Trim28Q62318 Gm16011-201ENSMUST00000121567 2662 ntBASIC19.73■□□□□ 0.75
Trim28Q62318 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Trim28Q62318 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim28Q62318 Snx14-206ENSMUST00000173039 2970 ntTSL 5 BASIC19.73■□□□□ 0.75
Trim28Q62318 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim28Q62318 BC037039-201ENSMUST00000192003 2205 ntBASIC19.72■□□□□ 0.75
Trim28Q62318 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim28Q62318 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim28Q62318 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim28Q62318 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim28Q62318 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim28Q62318 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Trim28Q62318 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC19.72■□□□□ 0.75
Trim28Q62318 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim28Q62318 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim28Q62318 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim28Q62318 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim28Q62318 Gm13015-201ENSMUST00000118674 204 ntBASIC19.72■□□□□ 0.75
Trim28Q62318 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC19.72■□□□□ 0.75
Trim28Q62318 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC19.72■□□□□ 0.75
Trim28Q62318 Gm30437-201ENSMUST00000206086 1201 ntBASIC19.72■□□□□ 0.75
Trim28Q62318 AC159114.1-201ENSMUST00000220349 266 ntBASIC19.72■□□□□ 0.75
Trim28Q62318 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC19.72■□□□□ 0.75
Trim28Q62318 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC19.72■□□□□ 0.75
Trim28Q62318 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim28Q62318 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
Trim28Q62318 Gm42901-201ENSMUST00000197735 3171 ntBASIC19.72■□□□□ 0.75
Trim28Q62318 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim28Q62318 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Trim28Q62318 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim28Q62318 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim28Q62318 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim28Q62318 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC19.71■□□□□ 0.75
Trim28Q62318 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim28Q62318 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim28Q62318 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
Trim28Q62318 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim28Q62318 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim28Q62318 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC19.71■□□□□ 0.75
Trim28Q62318 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC19.71■□□□□ 0.75
Trim28Q62318 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Trim28Q62318 AA543401-201ENSMUST00000164248 1269 ntBASIC19.71■□□□□ 0.75
Trim28Q62318 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC19.71■□□□□ 0.75
Trim28Q62318 Gm7774-201ENSMUST00000200064 533 ntBASIC19.71■□□□□ 0.75
Trim28Q62318 Tmem86b-204ENSMUST00000206610 522 ntTSL 3 BASIC19.71■□□□□ 0.75
Trim28Q62318 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 43.8 ms