Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
Upf3aQ3ULJ3 AC159621.2-201ENSMUST00000223519 1326 ntBASIC16.03■□□□□ 0.16
Upf3aQ3ULJ3 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Upf3aQ3ULJ3 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Upf3aQ3ULJ3 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
Upf3aQ3ULJ3 Gm11543-201ENSMUST00000120758 370 ntBASIC16.03■□□□□ 0.16
Upf3aQ3ULJ3 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC16.03■□□□□ 0.16
Upf3aQ3ULJ3 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Upf3aQ3ULJ3 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC16.03■□□□□ 0.16
Upf3aQ3ULJ3 Gm33785-201ENSMUST00000222961 886 ntTSL 5 BASIC16.03■□□□□ 0.16
Upf3aQ3ULJ3 CT010506.4-201ENSMUST00000225457 351 ntBASIC16.03■□□□□ 0.16
Upf3aQ3ULJ3 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Upf3aQ3ULJ3 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Upf3aQ3ULJ3 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
Upf3aQ3ULJ3 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Upf3aQ3ULJ3 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Upf3aQ3ULJ3 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
Upf3aQ3ULJ3 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Upf3aQ3ULJ3 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Upf3aQ3ULJ3 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Upf3aQ3ULJ3 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Upf3aQ3ULJ3 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Upf3aQ3ULJ3 Acin1-224ENSMUST00000167015 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Upf3aQ3ULJ3 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
Upf3aQ3ULJ3 Paqr9-201ENSMUST00000079597 8367 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
Upf3aQ3ULJ3 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Upf3aQ3ULJ3 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Upf3aQ3ULJ3 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC16.02■□□□□ 0.16
Upf3aQ3ULJ3 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Upf3aQ3ULJ3 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Upf3aQ3ULJ3 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Upf3aQ3ULJ3 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Upf3aQ3ULJ3 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC16.02■□□□□ 0.16
Upf3aQ3ULJ3 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
Upf3aQ3ULJ3 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC16.02■□□□□ 0.16
Upf3aQ3ULJ3 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
Upf3aQ3ULJ3 Gm37277-201ENSMUST00000194052 1111 ntBASIC16.02■□□□□ 0.16
Upf3aQ3ULJ3 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Upf3aQ3ULJ3 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Upf3aQ3ULJ3 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Upf3aQ3ULJ3 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
Upf3aQ3ULJ3 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Upf3aQ3ULJ3 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC16.02■□□□□ 0.15
Upf3aQ3ULJ3 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Upf3aQ3ULJ3 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Upf3aQ3ULJ3 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Upf3aQ3ULJ3 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
Upf3aQ3ULJ3 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Upf3aQ3ULJ3 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Upf3aQ3ULJ3 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
Upf3aQ3ULJ3 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Upf3aQ3ULJ3 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Upf3aQ3ULJ3 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
Upf3aQ3ULJ3 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
Upf3aQ3ULJ3 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Upf3aQ3ULJ3 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Upf3aQ3ULJ3 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
Upf3aQ3ULJ3 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
Upf3aQ3ULJ3 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Upf3aQ3ULJ3 AC155937.1-202ENSMUST00000156229 621 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
Upf3aQ3ULJ3 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Upf3aQ3ULJ3 2010015M23Rik-201ENSMUST00000181900 1199 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Upf3aQ3ULJ3 Bpnt1-205ENSMUST00000210277 1226 ntTSL 5 BASIC16.01■□□□□ 0.15
Upf3aQ3ULJ3 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC16.01■□□□□ 0.15
Upf3aQ3ULJ3 Gm5186-201ENSMUST00000218781 920 ntBASIC16.01■□□□□ 0.15
Upf3aQ3ULJ3 CT009510.1-201ENSMUST00000227972 270 ntBASIC16.01■□□□□ 0.15
Upf3aQ3ULJ3 Gm5771-201ENSMUST00000049079 798 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Upf3aQ3ULJ3 Olfr324-201ENSMUST00000054683 1122 ntAPPRIS P2 BASIC16.01■□□□□ 0.15
Upf3aQ3ULJ3 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Upf3aQ3ULJ3 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC16.01■□□□□ 0.15
Upf3aQ3ULJ3 Otub1-201ENSMUST00000025679 1713 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Upf3aQ3ULJ3 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
Upf3aQ3ULJ3 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Upf3aQ3ULJ3 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
Upf3aQ3ULJ3 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
Upf3aQ3ULJ3 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC16.01■□□□□ 0.15
Upf3aQ3ULJ3 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Upf3aQ3ULJ3 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Upf3aQ3ULJ3 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC16■□□□□ 0.15
Upf3aQ3ULJ3 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Upf3aQ3ULJ3 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Upf3aQ3ULJ3 Gm5421-201ENSMUST00000181698 2354 ntBASIC16■□□□□ 0.15
Upf3aQ3ULJ3 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Upf3aQ3ULJ3 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Upf3aQ3ULJ3 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Upf3aQ3ULJ3 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Upf3aQ3ULJ3 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Upf3aQ3ULJ3 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC16■□□□□ 0.15
Upf3aQ3ULJ3 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Upf3aQ3ULJ3 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Upf3aQ3ULJ3 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC16■□□□□ 0.15
Upf3aQ3ULJ3 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
Upf3aQ3ULJ3 Diablo-202ENSMUST00000111586 719 ntTSL 5 BASIC16■□□□□ 0.15
Upf3aQ3ULJ3 Gm27618-201ENSMUST00000183671 60 ntBASIC16■□□□□ 0.15
Upf3aQ3ULJ3 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC16■□□□□ 0.15
Upf3aQ3ULJ3 Diablo-201ENSMUST00000031385 681 ntTSL 2 BASIC16■□□□□ 0.15
Upf3aQ3ULJ3 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Upf3aQ3ULJ3 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Upf3aQ3ULJ3 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Upf3aQ3ULJ3 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 48.6 ms