Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC17.98■□□□□ 0.47
Limch1Q3UH68 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Limch1Q3UH68 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Limch1Q3UH68 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Limch1Q3UH68 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Limch1Q3UH68 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Limch1Q3UH68 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Limch1Q3UH68 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Limch1Q3UH68 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC17.98■□□□□ 0.47
Limch1Q3UH68 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Limch1Q3UH68 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC17.98■□□□□ 0.47
Limch1Q3UH68 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
Limch1Q3UH68 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Limch1Q3UH68 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Limch1Q3UH68 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Limch1Q3UH68 Slit1-203ENSMUST00000169141 5673 ntTSL 5 BASIC17.97■□□□□ 0.47
Limch1Q3UH68 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
Limch1Q3UH68 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Limch1Q3UH68 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Limch1Q3UH68 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Limch1Q3UH68 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Limch1Q3UH68 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
Limch1Q3UH68 Gm12260-201ENSMUST00000122447 411 ntBASIC17.97■□□□□ 0.47
Limch1Q3UH68 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC17.97■□□□□ 0.47
Limch1Q3UH68 Gm27702-201ENSMUST00000184512 56 ntBASIC17.97■□□□□ 0.47
Limch1Q3UH68 Gm43935-201ENSMUST00000203569 1050 ntBASIC17.97■□□□□ 0.47
Limch1Q3UH68 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Limch1Q3UH68 CT943659.1-201ENSMUST00000215459 326 ntBASIC17.97■□□□□ 0.47
Limch1Q3UH68 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Limch1Q3UH68 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Limch1Q3UH68 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
Limch1Q3UH68 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Limch1Q3UH68 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Limch1Q3UH68 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Limch1Q3UH68 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Limch1Q3UH68 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Limch1Q3UH68 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Limch1Q3UH68 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Limch1Q3UH68 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Limch1Q3UH68 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Limch1Q3UH68 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Limch1Q3UH68 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Limch1Q3UH68 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
Limch1Q3UH68 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Limch1Q3UH68 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Limch1Q3UH68 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Limch1Q3UH68 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Limch1Q3UH68 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Limch1Q3UH68 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Limch1Q3UH68 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC17.96■□□□□ 0.47
Limch1Q3UH68 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC17.96■□□□□ 0.47
Limch1Q3UH68 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
Limch1Q3UH68 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC17.96■□□□□ 0.47
Limch1Q3UH68 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Limch1Q3UH68 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Limch1Q3UH68 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
Limch1Q3UH68 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Limch1Q3UH68 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC17.96■□□□□ 0.47
Limch1Q3UH68 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Limch1Q3UH68 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Limch1Q3UH68 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
Limch1Q3UH68 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Limch1Q3UH68 Grk6-207ENSMUST00000225925 2769 ntBASIC17.96■□□□□ 0.46
Limch1Q3UH68 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
Limch1Q3UH68 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
Limch1Q3UH68 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Limch1Q3UH68 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Limch1Q3UH68 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Limch1Q3UH68 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Limch1Q3UH68 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Limch1Q3UH68 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Limch1Q3UH68 Tmtc2-201ENSMUST00000061506 5629 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Limch1Q3UH68 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Limch1Q3UH68 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Limch1Q3UH68 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Limch1Q3UH68 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Limch1Q3UH68 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Limch1Q3UH68 Gm14140-201ENSMUST00000119999 995 ntBASIC17.95■□□□□ 0.46
Limch1Q3UH68 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Limch1Q3UH68 Gm6736-201ENSMUST00000166583 948 ntBASIC17.95■□□□□ 0.46
Limch1Q3UH68 Gm7286-201ENSMUST00000182691 1007 ntBASIC17.95■□□□□ 0.46
Limch1Q3UH68 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Limch1Q3UH68 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Limch1Q3UH68 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Limch1Q3UH68 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Limch1Q3UH68 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Limch1Q3UH68 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Limch1Q3UH68 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Limch1Q3UH68 Gm37500-201ENSMUST00000192059 1443 ntBASIC17.95■□□□□ 0.46
Limch1Q3UH68 Tmpo-201ENSMUST00000020123 3772 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Limch1Q3UH68 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC17.95■□□□□ 0.46
Limch1Q3UH68 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Limch1Q3UH68 Xpo1-202ENSMUST00000102869 6004 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Limch1Q3UH68 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Limch1Q3UH68 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Limch1Q3UH68 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Limch1Q3UH68 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Limch1Q3UH68 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Limch1Q3UH68 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC17.94■□□□□ 0.46
Limch1Q3UH68 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 31.8 ms