Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Col17a1Q07563 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Col17a1Q07563 4933409G03Rik-201ENSMUST00000102713 1263 ntAPPRIS P2 TSL 1 (best) BASIC23.21■■□□□ 1.31
Col17a1Q07563 Cd27-203ENSMUST00000112282 588 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Col17a1Q07563 C030047K22Rik-201ENSMUST00000150382 1164 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Col17a1Q07563 Txnl4b-202ENSMUST00000178445 830 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Col17a1Q07563 Gm40466-201ENSMUST00000212174 422 ntBASIC23.21■■□□□ 1.31
Col17a1Q07563 Ndufb3-201ENSMUST00000027193 763 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Col17a1Q07563 Lim2-201ENSMUST00000004732 884 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Col17a1Q07563 Ttr-201ENSMUST00000075312 1219 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Col17a1Q07563 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC23.21■■□□□ 1.31
Col17a1Q07563 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Col17a1Q07563 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Col17a1Q07563 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC23.21■■□□□ 1.31
Col17a1Q07563 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC23.2■■□□□ 1.31
Col17a1Q07563 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.31
Col17a1Q07563 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.31
Col17a1Q07563 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.31
Col17a1Q07563 Phyh-201ENSMUST00000027975 1438 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Col17a1Q07563 Gm5479-201ENSMUST00000160578 435 ntBASIC23.2■■□□□ 1.3
Col17a1Q07563 Dpy30-202ENSMUST00000164832 799 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Col17a1Q07563 Gm28380-201ENSMUST00000188800 385 ntTSL 5 BASIC23.2■■□□□ 1.3
Col17a1Q07563 AC165254.1-201ENSMUST00000220736 599 ntTSL 5 BASIC23.2■■□□□ 1.3
Col17a1Q07563 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
Col17a1Q07563 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Col17a1Q07563 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Col17a1Q07563 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
Col17a1Q07563 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Col17a1Q07563 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Col17a1Q07563 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Col17a1Q07563 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Col17a1Q07563 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Col17a1Q07563 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Col17a1Q07563 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Col17a1Q07563 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC23.19■■□□□ 1.3
Col17a1Q07563 Gm38000-201ENSMUST00000192390 1215 ntBASIC23.19■■□□□ 1.3
Col17a1Q07563 Ighv8-8-201ENSMUST00000192591 358 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
Col17a1Q07563 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
Col17a1Q07563 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Col17a1Q07563 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
Col17a1Q07563 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Col17a1Q07563 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Col17a1Q07563 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
Col17a1Q07563 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
Col17a1Q07563 Ldlrad2-201ENSMUST00000178923 429 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
Col17a1Q07563 Gm5363-201ENSMUST00000211927 938 ntBASIC23.18■■□□□ 1.3
Col17a1Q07563 Gm8973-201ENSMUST00000079818 315 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
Col17a1Q07563 Gm8775-201ENSMUST00000170943 1327 ntBASIC23.18■■□□□ 1.3
Col17a1Q07563 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC23.18■■□□□ 1.3
Col17a1Q07563 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Col17a1Q07563 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Col17a1Q07563 Gm12585-201ENSMUST00000117307 290 ntBASIC23.17■■□□□ 1.3
Col17a1Q07563 Gm16087-201ENSMUST00000124395 964 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Col17a1Q07563 Gm11523-203ENSMUST00000184482 802 ntTSL 3 BASIC23.17■■□□□ 1.3
Col17a1Q07563 2900092O11Rik-201ENSMUST00000191770 755 ntBASIC23.17■■□□□ 1.3
Col17a1Q07563 Ssr2-202ENSMUST00000192495 620 ntTSL 5 BASIC23.17■■□□□ 1.3
Col17a1Q07563 Gm44364-201ENSMUST00000198368 141 ntBASIC23.17■■□□□ 1.3
Col17a1Q07563 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
Col17a1Q07563 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC23.17■■□□□ 1.3
Col17a1Q07563 Cts7-204ENSMUST00000225321 1257 ntBASIC23.17■■□□□ 1.3
Col17a1Q07563 Gm10012-201ENSMUST00000078252 192 ntBASIC23.17■■□□□ 1.3
Col17a1Q07563 Rpl10l-201ENSMUST00000081908 1023 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
Col17a1Q07563 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Col17a1Q07563 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
Col17a1Q07563 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Col17a1Q07563 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Col17a1Q07563 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Col17a1Q07563 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Col17a1Q07563 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC23.17■■□□□ 1.3
Col17a1Q07563 Txn2-202ENSMUST00000100486 676 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Col17a1Q07563 Gm2383-201ENSMUST00000181461 807 ntBASIC23.17■■□□□ 1.3
Col17a1Q07563 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC23.17■■□□□ 1.3
Col17a1Q07563 Wfdc1-202ENSMUST00000212901 921 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
Col17a1Q07563 Rbm8a2-201ENSMUST00000104983 1338 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
Col17a1Q07563 A530083I20Rik-203ENSMUST00000214426 1855 ntTSL 5 BASIC23.17■■□□□ 1.3
Col17a1Q07563 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
Col17a1Q07563 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC23.16■■□□□ 1.3
Col17a1Q07563 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Col17a1Q07563 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Col17a1Q07563 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Col17a1Q07563 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC23.16■■□□□ 1.3
Col17a1Q07563 Gm22018-201ENSMUST00000104357 131 ntBASIC23.16■■□□□ 1.3
Col17a1Q07563 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Col17a1Q07563 Gm15593-201ENSMUST00000122085 1008 ntBASIC23.16■■□□□ 1.3
Col17a1Q07563 2310057J18Rik-201ENSMUST00000015663 1238 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Col17a1Q07563 C030017D09Rik-201ENSMUST00000163690 923 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Col17a1Q07563 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Col17a1Q07563 Chd3os-203ENSMUST00000218008 1026 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Col17a1Q07563 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Col17a1Q07563 Csrp3-201ENSMUST00000032658 877 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Col17a1Q07563 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Col17a1Q07563 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC23.16■■□□□ 1.3
Col17a1Q07563 Rad52-201ENSMUST00000032269 1617 ntAPPRIS P3 TSL 1 (best) BASIC23.15■■□□□ 1.3
Col17a1Q07563 Rarb-207ENSMUST00000225921 2756 ntBASIC23.15■■□□□ 1.3
Col17a1Q07563 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC23.15■■□□□ 1.3
Col17a1Q07563 Gm22323-201ENSMUST00000103832 109 ntBASIC23.15■■□□□ 1.3
Col17a1Q07563 Gm12749-201ENSMUST00000122138 1159 ntBASIC23.15■■□□□ 1.3
Col17a1Q07563 Creb3-206ENSMUST00000167751 1212 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
Col17a1Q07563 Cdk3-ps-202ENSMUST00000174177 915 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
Col17a1Q07563 4930447A16Rik-201ENSMUST00000022897 587 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Retrieved 100 of 76,532 protein–RNA pairs in 42.5 ms