Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx3-1P97436 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Nkx3-1P97436 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx3-1P97436 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC13.18□□□□□ -0.3
Nkx3-1P97436 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx3-1P97436 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx3-1P97436 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx3-1P97436 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Nkx3-1P97436 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx3-1P97436 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx3-1P97436 Gm14722-201ENSMUST00000118943 689 ntBASIC13.18□□□□□ -0.3
Nkx3-1P97436 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx3-1P97436 Gm10499-201ENSMUST00000174094 934 ntBASIC13.18□□□□□ -0.3
Nkx3-1P97436 Gm18889-201ENSMUST00000174284 929 ntBASIC13.18□□□□□ -0.3
Nkx3-1P97436 Rpph1-201ENSMUST00000175096 319 ntBASIC13.18□□□□□ -0.3
Nkx3-1P97436 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx3-1P97436 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Nkx3-1P97436 Gm43474-201ENSMUST00000196415 774 ntBASIC13.18□□□□□ -0.3
Nkx3-1P97436 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC13.18□□□□□ -0.3
Nkx3-1P97436 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC13.18□□□□□ -0.3
Nkx3-1P97436 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC13.18□□□□□ -0.3
Nkx3-1P97436 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Nkx3-1P97436 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx3-1P97436 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx3-1P97436 Kcnj14-201ENSMUST00000071937 2681 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx3-1P97436 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx3-1P97436 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx3-1P97436 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx3-1P97436 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx3-1P97436 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx3-1P97436 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Nkx3-1P97436 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx3-1P97436 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC13.18□□□□□ -0.3
Nkx3-1P97436 Gm44729-201ENSMUST00000206759 2052 ntBASIC13.17□□□□□ -0.3
Nkx3-1P97436 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx3-1P97436 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx3-1P97436 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx3-1P97436 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Nkx3-1P97436 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx3-1P97436 Slit1-203ENSMUST00000169141 5673 ntTSL 5 BASIC13.17□□□□□ -0.3
Nkx3-1P97436 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx3-1P97436 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx3-1P97436 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx3-1P97436 Desi2-201ENSMUST00000027783 8802 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx3-1P97436 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC13.17□□□□□ -0.3
Nkx3-1P97436 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx3-1P97436 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx3-1P97436 Gm16198-201ENSMUST00000118766 670 ntBASIC13.17□□□□□ -0.3
Nkx3-1P97436 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx3-1P97436 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC13.17□□□□□ -0.3
Nkx3-1P97436 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC13.17□□□□□ -0.3
Nkx3-1P97436 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC13.17□□□□□ -0.3
Nkx3-1P97436 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx3-1P97436 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC13.17□□□□□ -0.3
Nkx3-1P97436 AC160980.1-201ENSMUST00000224136 970 ntBASIC13.17□□□□□ -0.3
Nkx3-1P97436 AC140397.2-201ENSMUST00000224213 834 ntBASIC13.17□□□□□ -0.3
Nkx3-1P97436 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx3-1P97436 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx3-1P97436 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx3-1P97436 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx3-1P97436 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx3-1P97436 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Nkx3-1P97436 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx3-1P97436 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx3-1P97436 AC126250.1-201ENSMUST00000228343 1768 ntBASIC13.17□□□□□ -0.3
Nkx3-1P97436 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx3-1P97436 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx3-1P97436 Ddi2-201ENSMUST00000102484 9553 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx3-1P97436 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Nkx3-1P97436 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Nkx3-1P97436 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Nkx3-1P97436 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Nkx3-1P97436 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Nkx3-1P97436 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Nkx3-1P97436 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Nkx3-1P97436 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Nkx3-1P97436 Kcnc1-201ENSMUST00000025202 7760 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Nkx3-1P97436 Cpeb2-205ENSMUST00000169035 7050 ntAPPRIS P2 TSL 5 BASIC13.16□□□□□ -0.3
Nkx3-1P97436 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Nkx3-1P97436 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC13.16□□□□□ -0.3
Nkx3-1P97436 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Nkx3-1P97436 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Nkx3-1P97436 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC13.16□□□□□ -0.3
Nkx3-1P97436 Gm11788-201ENSMUST00000142520 562 ntTSL 3 BASIC13.16□□□□□ -0.3
Nkx3-1P97436 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC13.16□□□□□ -0.3
Nkx3-1P97436 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Nkx3-1P97436 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Nkx3-1P97436 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC13.16□□□□□ -0.3
Nkx3-1P97436 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC13.16□□□□□ -0.3
Nkx3-1P97436 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC13.16□□□□□ -0.3
Nkx3-1P97436 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Nkx3-1P97436 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Nkx3-1P97436 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Nkx3-1P97436 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Nkx3-1P97436 Olfr520-201ENSMUST00000098264 951 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Nkx3-1P97436 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
Nkx3-1P97436 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Nkx3-1P97436 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC13.16□□□□□ -0.3
Nkx3-1P97436 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Nkx3-1P97436 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC13.16□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 45 ms