Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Wwc2-201ENSMUST00000057561 8678 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Cdh11P55288 Gm38058-201ENSMUST00000194323 4368 ntBASIC13.95□□□□□ -0.18
Cdh11P55288 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC13.95□□□□□ -0.18
Cdh11P55288 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Cdh11P55288 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC13.95□□□□□ -0.18
Cdh11P55288 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC13.95□□□□□ -0.18
Cdh11P55288 Gm5864-201ENSMUST00000202263 970 ntBASIC13.95□□□□□ -0.18
Cdh11P55288 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Cdh11P55288 AC159301.1-201ENSMUST00000225130 1182 ntBASIC13.95□□□□□ -0.18
Cdh11P55288 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Cdh11P55288 Gm45133-201ENSMUST00000207548 2773 ntBASIC13.95□□□□□ -0.18
Cdh11P55288 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
Cdh11P55288 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Cdh11P55288 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Cdh11P55288 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
Cdh11P55288 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Cdh11P55288 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Cdh11P55288 Gm13034-201ENSMUST00000121342 3177 ntBASIC13.95□□□□□ -0.18
Cdh11P55288 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Cdh11P55288 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Cdh11P55288 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
Cdh11P55288 Tns1-222ENSMUST00000212888 5643 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
Cdh11P55288 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC13.94□□□□□ -0.18
Cdh11P55288 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Cdh11P55288 Six4-201ENSMUST00000043208 6402 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Cdh11P55288 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
Cdh11P55288 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Cdh11P55288 Gm13884-201ENSMUST00000118103 829 ntBASIC13.94□□□□□ -0.18
Cdh11P55288 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Cdh11P55288 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Cdh11P55288 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC13.94□□□□□ -0.18
Cdh11P55288 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC13.94□□□□□ -0.18
Cdh11P55288 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Cdh11P55288 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC13.94□□□□□ -0.18
Cdh11P55288 AC164629.2-201ENSMUST00000217916 270 ntBASIC13.94□□□□□ -0.18
Cdh11P55288 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Cdh11P55288 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Cdh11P55288 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Cdh11P55288 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Cdh11P55288 Gm10676-201ENSMUST00000098778 3221 ntBASIC13.94□□□□□ -0.18
Cdh11P55288 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
Cdh11P55288 Arap2-201ENSMUST00000076623 7306 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
Cdh11P55288 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Cdh11P55288 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Cdh11P55288 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
Cdh11P55288 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Cdh11P55288 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC13.94□□□□□ -0.18
Cdh11P55288 Gm9917-201ENSMUST00000180865 5192 ntTSL 3 BASIC13.94□□□□□ -0.18
Cdh11P55288 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Cdh11P55288 Pik3c2b-201ENSMUST00000077730 7928 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
Cdh11P55288 Gm26702-201ENSMUST00000181730 4570 ntTSL 5 BASIC13.94□□□□□ -0.18
Cdh11P55288 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Cdh11P55288 Gm38042-201ENSMUST00000191614 5208 ntBASIC13.94□□□□□ -0.18
Cdh11P55288 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Cdh11P55288 Rad54l2-201ENSMUST00000046502 9305 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Cdh11P55288 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Cdh11P55288 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Cdh11P55288 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cdh11P55288 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cdh11P55288 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cdh11P55288 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cdh11P55288 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Cdh11P55288 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC13.93□□□□□ -0.18
Cdh11P55288 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cdh11P55288 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cdh11P55288 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cdh11P55288 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cdh11P55288 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC13.93□□□□□ -0.18
Cdh11P55288 Gm15165-201ENSMUST00000118140 502 ntBASIC13.93□□□□□ -0.18
Cdh11P55288 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cdh11P55288 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cdh11P55288 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cdh11P55288 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Cdh11P55288 Gm44771-201ENSMUST00000206975 626 ntBASIC13.93□□□□□ -0.18
Cdh11P55288 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC13.93□□□□□ -0.18
Cdh11P55288 Hacd4-201ENSMUST00000030221 2089 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cdh11P55288 Plxnb1-201ENSMUST00000072093 8649 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cdh11P55288 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cdh11P55288 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cdh11P55288 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Cdh11P55288 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cdh11P55288 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cdh11P55288 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cdh11P55288 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cdh11P55288 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cdh11P55288 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
Cdh11P55288 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cdh11P55288 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cdh11P55288 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cdh11P55288 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cdh11P55288 Gm6858-201ENSMUST00000208582 1468 ntBASIC13.93□□□□□ -0.18
Cdh11P55288 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
Cdh11P55288 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cdh11P55288 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Cdh11P55288 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
Cdh11P55288 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC13.92□□□□□ -0.18
Cdh11P55288 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Cdh11P55288 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Cdh11P55288 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Cdh11P55288 Arhgef40-204ENSMUST00000182061 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 56.8 ms