Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ercc3P49135 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Ercc3P49135 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ercc3P49135 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ercc3P49135 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Ercc3P49135 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Ercc3P49135 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC18.13■□□□□ 0.49
Ercc3P49135 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ercc3P49135 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ercc3P49135 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC18.13■□□□□ 0.49
Ercc3P49135 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC18.13■□□□□ 0.49
Ercc3P49135 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Ercc3P49135 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ercc3P49135 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ercc3P49135 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC18.13■□□□□ 0.49
Ercc3P49135 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ercc3P49135 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC18.13■□□□□ 0.49
Ercc3P49135 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ercc3P49135 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC18.13■□□□□ 0.49
Ercc3P49135 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
Ercc3P49135 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC18.12■□□□□ 0.49
Ercc3P49135 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Ercc3P49135 Gm5184-201ENSMUST00000220417 1702 ntBASIC18.12■□□□□ 0.49
Ercc3P49135 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Ercc3P49135 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Ercc3P49135 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ercc3P49135 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ercc3P49135 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ercc3P49135 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Ercc3P49135 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC18.12■□□□□ 0.49
Ercc3P49135 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Ercc3P49135 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC18.12■□□□□ 0.49
Ercc3P49135 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Ercc3P49135 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC18.12■□□□□ 0.49
Ercc3P49135 Gm8318-201ENSMUST00000182954 872 ntBASIC18.12■□□□□ 0.49
Ercc3P49135 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Ercc3P49135 Gm6443-201ENSMUST00000203599 874 ntBASIC18.12■□□□□ 0.49
Ercc3P49135 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC18.12■□□□□ 0.49
Ercc3P49135 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ercc3P49135 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ercc3P49135 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Ercc3P49135 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Ercc3P49135 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ercc3P49135 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC18.12■□□□□ 0.49
Ercc3P49135 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ercc3P49135 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ercc3P49135 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ercc3P49135 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ercc3P49135 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC18.11■□□□□ 0.49
Ercc3P49135 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC18.11■□□□□ 0.49
Ercc3P49135 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ercc3P49135 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Ercc3P49135 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Ercc3P49135 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ercc3P49135 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ercc3P49135 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC18.11■□□□□ 0.49
Ercc3P49135 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Ercc3P49135 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC18.11■□□□□ 0.49
Ercc3P49135 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC18.11■□□□□ 0.49
Ercc3P49135 Gm27300-201ENSMUST00000184085 97 ntBASIC18.11■□□□□ 0.49
Ercc3P49135 Gm27335-201ENSMUST00000184758 97 ntBASIC18.11■□□□□ 0.49
Ercc3P49135 Gm43514-201ENSMUST00000198852 424 ntBASIC18.11■□□□□ 0.49
Ercc3P49135 Psmb5-202ENSMUST00000227257 622 ntBASIC18.11■□□□□ 0.49
Ercc3P49135 Rpl8-201ENSMUST00000004072 862 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ercc3P49135 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ercc3P49135 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ercc3P49135 Best4-ps-201ENSMUST00000129783 1380 ntBASIC18.11■□□□□ 0.49
Ercc3P49135 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ercc3P49135 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ercc3P49135 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ercc3P49135 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ercc3P49135 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC18.11■□□□□ 0.49
Ercc3P49135 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ercc3P49135 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC18.11■□□□□ 0.49
Ercc3P49135 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Ercc3P49135 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Ercc3P49135 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Ercc3P49135 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ercc3P49135 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Ercc3P49135 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ercc3P49135 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Ercc3P49135 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ercc3P49135 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ercc3P49135 Exo5-204ENSMUST00000177880 1969 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
Ercc3P49135 Exo5-201ENSMUST00000030375 1996 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ercc3P49135 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Ercc3P49135 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ercc3P49135 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ercc3P49135 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Ercc3P49135 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ercc3P49135 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Ercc3P49135 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ercc3P49135 Gm10499-201ENSMUST00000174094 934 ntBASIC18.1■□□□□ 0.49
Ercc3P49135 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Ercc3P49135 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC18.1■□□□□ 0.49
Ercc3P49135 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Ercc3P49135 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ercc3P49135 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ercc3P49135 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ercc3P49135 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 28.9 ms