Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC14.1□□□□□ -0.15
Cd40lgP27548 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Cd40lgP27548 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC14.1□□□□□ -0.15
Cd40lgP27548 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cd40lgP27548 AC117588.1-201ENSMUST00000228510 999 ntBASIC14.1□□□□□ -0.15
Cd40lgP27548 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cd40lgP27548 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cd40lgP27548 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Cd40lgP27548 Fzd6-202ENSMUST00000179165 4325 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cd40lgP27548 Cdc73-201ENSMUST00000018337 11586 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cd40lgP27548 Adam23-205ENSMUST00000114107 6110 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Cd40lgP27548 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cd40lgP27548 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cd40lgP27548 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC14.1□□□□□ -0.15
Cd40lgP27548 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC14.1□□□□□ -0.15
Cd40lgP27548 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cd40lgP27548 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cd40lgP27548 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cd40lgP27548 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cd40lgP27548 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cd40lgP27548 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cd40lgP27548 Atp13a3-202ENSMUST00000100013 7310 ntAPPRIS P4 TSL 5 BASIC14.09□□□□□ -0.15
Cd40lgP27548 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cd40lgP27548 Rbfox2-206ENSMUST00000227314 1810 ntBASIC14.09□□□□□ -0.15
Cd40lgP27548 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cd40lgP27548 Gm25990-201ENSMUST00000102440 86 ntBASIC14.09□□□□□ -0.15
Cd40lgP27548 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Cd40lgP27548 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC14.09□□□□□ -0.15
Cd40lgP27548 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Cd40lgP27548 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC14.09□□□□□ -0.15
Cd40lgP27548 Gm19164-201ENSMUST00000210667 640 ntBASIC14.09□□□□□ -0.15
Cd40lgP27548 Ralgapb-203ENSMUST00000109486 8383 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cd40lgP27548 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Cd40lgP27548 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Cd40lgP27548 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Cd40lgP27548 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Cd40lgP27548 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cd40lgP27548 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cd40lgP27548 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cd40lgP27548 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Cd40lgP27548 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cd40lgP27548 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
Cd40lgP27548 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC14.09□□□□□ -0.15
Cd40lgP27548 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cd40lgP27548 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.15
Cd40lgP27548 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Cd40lgP27548 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.15
Cd40lgP27548 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
Cd40lgP27548 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Cd40lgP27548 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Cd40lgP27548 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Cd40lgP27548 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Cd40lgP27548 Gm7222-201ENSMUST00000117512 906 ntBASIC14.08□□□□□ -0.16
Cd40lgP27548 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC14.08□□□□□ -0.16
Cd40lgP27548 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Cd40lgP27548 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Cd40lgP27548 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Cd40lgP27548 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Cd40lgP27548 Gm2651-201ENSMUST00000203560 838 ntBASIC14.08□□□□□ -0.16
Cd40lgP27548 Gm44771-201ENSMUST00000206975 626 ntBASIC14.08□□□□□ -0.16
Cd40lgP27548 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Cd40lgP27548 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Cd40lgP27548 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Cd40lgP27548 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC14.08□□□□□ -0.16
Cd40lgP27548 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC14.08□□□□□ -0.16
Cd40lgP27548 Satb2-201ENSMUST00000042857 6277 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Cd40lgP27548 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Cd40lgP27548 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Cd40lgP27548 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Cd40lgP27548 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Cd40lgP27548 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Cd40lgP27548 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Cd40lgP27548 Gm8784-201ENSMUST00000222096 1435 ntBASIC14.07□□□□□ -0.16
Cd40lgP27548 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Cd40lgP27548 Lamb2-201ENSMUST00000065014 5629 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Cd40lgP27548 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Cd40lgP27548 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Cd40lgP27548 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Cd40lgP27548 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Cd40lgP27548 Gad2-201ENSMUST00000028123 5744 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Cd40lgP27548 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Cd40lgP27548 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Cd40lgP27548 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Cd40lgP27548 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Cd40lgP27548 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Cd40lgP27548 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC14.07□□□□□ -0.16
Cd40lgP27548 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Cd40lgP27548 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Cd40lgP27548 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Cd40lgP27548 Gm7230-201ENSMUST00000173026 815 ntBASIC14.07□□□□□ -0.16
Cd40lgP27548 Gm6089-201ENSMUST00000197666 938 ntBASIC14.07□□□□□ -0.16
Cd40lgP27548 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC14.07□□□□□ -0.16
Cd40lgP27548 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Cd40lgP27548 Pcgf5-211ENSMUST00000225920 6443 ntBASIC14.07□□□□□ -0.16
Cd40lgP27548 Celf1-202ENSMUST00000068726 7851 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Cd40lgP27548 Arap2-201ENSMUST00000076623 7306 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Cd40lgP27548 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Cd40lgP27548 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Cd40lgP27548 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Cd40lgP27548 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 64.1 ms