Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Gm30684-201ENSMUST00000205632 600 ntTSL 3 BASIC14.93□□□□□ -0.02
Chd3B1AR17 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Chd3B1AR17 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Chd3B1AR17 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Chd3B1AR17 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
Chd3B1AR17 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Chd3B1AR17 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Chd3B1AR17 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
Chd3B1AR17 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
Chd3B1AR17 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC14.93□□□□□ -0.02
Chd3B1AR17 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Chd3B1AR17 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
Chd3B1AR17 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
Chd3B1AR17 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Chd3B1AR17 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Chd3B1AR17 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
Chd3B1AR17 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Chd3B1AR17 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Chd3B1AR17 Gm11025-201ENSMUST00000140773 466 ntBASIC14.93□□□□□ -0.02
Chd3B1AR17 AC139382.1-201ENSMUST00000221402 498 ntBASIC14.93□□□□□ -0.02
Chd3B1AR17 Emg1-201ENSMUST00000004379 1034 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Chd3B1AR17 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Chd3B1AR17 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Chd3B1AR17 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
Chd3B1AR17 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
Chd3B1AR17 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Chd3B1AR17 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Chd3B1AR17 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Chd3B1AR17 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
Chd3B1AR17 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC14.92□□□□□ -0.02
Chd3B1AR17 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
Chd3B1AR17 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC14.92□□□□□ -0.02
Chd3B1AR17 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Chd3B1AR17 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Chd3B1AR17 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Chd3B1AR17 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Chd3B1AR17 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Chd3B1AR17 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Chd3B1AR17 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Chd3B1AR17 Appl1-201ENSMUST00000036570 7642 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Chd3B1AR17 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Chd3B1AR17 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC14.91□□□□□ -0.02
Chd3B1AR17 1700025N23Rik-201ENSMUST00000186189 915 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Chd3B1AR17 Gm20553-201ENSMUST00000204205 844 ntBASIC14.91□□□□□ -0.02
Chd3B1AR17 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC14.91□□□□□ -0.02
Chd3B1AR17 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Chd3B1AR17 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Chd3B1AR17 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Chd3B1AR17 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
Chd3B1AR17 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Chd3B1AR17 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC14.91□□□□□ -0.02
Chd3B1AR17 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Chd3B1AR17 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Chd3B1AR17 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC14.91□□□□□ -0.02
Chd3B1AR17 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Chd3B1AR17 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Chd3B1AR17 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Chd3B1AR17 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Chd3B1AR17 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC14.91□□□□□ -0.02
Chd3B1AR17 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Chd3B1AR17 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Chd3B1AR17 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC14.91□□□□□ -0.02
Chd3B1AR17 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Chd3B1AR17 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Chd3B1AR17 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC14.91□□□□□ -0.02
Chd3B1AR17 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC14.91□□□□□ -0.02
Chd3B1AR17 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC14.91□□□□□ -0.02
Chd3B1AR17 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC14.91□□□□□ -0.02
Chd3B1AR17 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC14.91□□□□□ -0.02
Chd3B1AR17 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC14.91□□□□□ -0.02
Chd3B1AR17 Gzma-201ENSMUST00000023897 878 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Chd3B1AR17 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Chd3B1AR17 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Chd3B1AR17 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC14.91□□□□□ -0.02
Chd3B1AR17 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Chd3B1AR17 Car10-205ENSMUST00000107861 2613 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Chd3B1AR17 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Chd3B1AR17 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Chd3B1AR17 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Chd3B1AR17 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Chd3B1AR17 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
Chd3B1AR17 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Chd3B1AR17 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Chd3B1AR17 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Chd3B1AR17 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Chd3B1AR17 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Chd3B1AR17 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Chd3B1AR17 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Chd3B1AR17 Gm16011-201ENSMUST00000121567 2662 ntBASIC14.9□□□□□ -0.02
Chd3B1AR17 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Chd3B1AR17 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Chd3B1AR17 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC14.9□□□□□ -0.02
Chd3B1AR17 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC14.9□□□□□ -0.02
Chd3B1AR17 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Chd3B1AR17 AC155937.1-202ENSMUST00000156229 621 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
Chd3B1AR17 CT030684.1-201ENSMUST00000227292 914 ntBASIC14.9□□□□□ -0.02
Chd3B1AR17 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Chd3B1AR17 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Chd3B1AR17 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Chd3B1AR17 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms