Protein–RNA interactions for Protein: Q9D3E6

Stag1, Cohesin subunit SA-1, mousemouse

Predictions only

Length 1,258 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Stag1Q9D3E6 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Stag1Q9D3E6 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Stag1Q9D3E6 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC18.18■□□□□ 0.5
Stag1Q9D3E6 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Stag1Q9D3E6 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Stag1Q9D3E6 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Stag1Q9D3E6 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Stag1Q9D3E6 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Stag1Q9D3E6 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Stag1Q9D3E6 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Stag1Q9D3E6 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Stag1Q9D3E6 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC18.18■□□□□ 0.5
Stag1Q9D3E6 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Stag1Q9D3E6 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC18.18■□□□□ 0.5
Stag1Q9D3E6 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC18.18■□□□□ 0.5
Stag1Q9D3E6 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC18.18■□□□□ 0.5
Stag1Q9D3E6 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Stag1Q9D3E6 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC18.18■□□□□ 0.5
Stag1Q9D3E6 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Stag1Q9D3E6 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC18.18■□□□□ 0.5
Stag1Q9D3E6 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Stag1Q9D3E6 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Stag1Q9D3E6 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Stag1Q9D3E6 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Stag1Q9D3E6 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Stag1Q9D3E6 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Stag1Q9D3E6 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Stag1Q9D3E6 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Stag1Q9D3E6 AC163637.1-201ENSMUST00000215491 1894 ntBASIC18.18■□□□□ 0.5
Stag1Q9D3E6 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Stag1Q9D3E6 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Stag1Q9D3E6 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Stag1Q9D3E6 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Stag1Q9D3E6 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Stag1Q9D3E6 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Stag1Q9D3E6 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Stag1Q9D3E6 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Stag1Q9D3E6 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Stag1Q9D3E6 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Stag1Q9D3E6 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC18.17■□□□□ 0.5
Stag1Q9D3E6 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Stag1Q9D3E6 AC159114.1-201ENSMUST00000220349 266 ntBASIC18.17■□□□□ 0.5
Stag1Q9D3E6 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Stag1Q9D3E6 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Stag1Q9D3E6 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Stag1Q9D3E6 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Stag1Q9D3E6 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Stag1Q9D3E6 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Stag1Q9D3E6 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Stag1Q9D3E6 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Stag1Q9D3E6 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Stag1Q9D3E6 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Stag1Q9D3E6 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Stag1Q9D3E6 Ccdc166-201ENSMUST00000182172 2584 ntBASIC18.16■□□□□ 0.5
Stag1Q9D3E6 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Stag1Q9D3E6 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Stag1Q9D3E6 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Stag1Q9D3E6 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Stag1Q9D3E6 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Stag1Q9D3E6 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Stag1Q9D3E6 Gm43125-201ENSMUST00000201724 730 ntBASIC18.16■□□□□ 0.5
Stag1Q9D3E6 AC140397.2-201ENSMUST00000224213 834 ntBASIC18.16■□□□□ 0.5
Stag1Q9D3E6 AC158982.1-201ENSMUST00000228377 901 ntBASIC18.16■□□□□ 0.5
Stag1Q9D3E6 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Stag1Q9D3E6 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Stag1Q9D3E6 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
Stag1Q9D3E6 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Stag1Q9D3E6 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Stag1Q9D3E6 Nudt18-203ENSMUST00000228768 1578 ntBASIC18.16■□□□□ 0.5
Stag1Q9D3E6 Gm45293-201ENSMUST00000209754 1812 ntBASIC18.16■□□□□ 0.5
Stag1Q9D3E6 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Stag1Q9D3E6 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Stag1Q9D3E6 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Stag1Q9D3E6 Gm16976-201ENSMUST00000099718 1894 ntTSL 5 BASIC18.16■□□□□ 0.5
Stag1Q9D3E6 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Stag1Q9D3E6 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC18.15■□□□□ 0.5
Stag1Q9D3E6 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Stag1Q9D3E6 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Stag1Q9D3E6 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
Stag1Q9D3E6 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Stag1Q9D3E6 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Stag1Q9D3E6 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Stag1Q9D3E6 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Stag1Q9D3E6 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Stag1Q9D3E6 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC18.15■□□□□ 0.5
Stag1Q9D3E6 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC18.15■□□□□ 0.5
Stag1Q9D3E6 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC18.15■□□□□ 0.5
Stag1Q9D3E6 1700025N23Rik-201ENSMUST00000186189 915 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Stag1Q9D3E6 Gm18057-201ENSMUST00000208220 503 ntBASIC18.15■□□□□ 0.5
Stag1Q9D3E6 D930028M14Rik-201ENSMUST00000098678 1003 ntTSL 2 BASIC18.15■□□□□ 0.5
Stag1Q9D3E6 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Stag1Q9D3E6 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Stag1Q9D3E6 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Stag1Q9D3E6 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Stag1Q9D3E6 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Stag1Q9D3E6 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Stag1Q9D3E6 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC18.15■□□□□ 0.5
Stag1Q9D3E6 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Stag1Q9D3E6 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC18.15■□□□□ 0.5
Stag1Q9D3E6 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 26 ms